FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1119.ptfa, 791 aa vs ./tmplib.26680 library 1768226 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.7803+/-0.00679; mu= 1.1378+/- 0.447 mean_var=266.4587+/-64.807, 0's: 0 Z-trim: 6 B-trim: 143 in 1/35 Lambda= 0.0786 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4148 ( 498 res) mpj02962 ( 498) 233 40 0.00066 mKIAA0866 ( 1984 res) mtg01789 (1984) 212 39 0.0081 >>mKIAA4148 ( 498 res) mpj02962 (498 aa) initn: 80 init1: 56 opt: 233 Z-score: 162.4 bits: 40.2 E(): 0.00066 Smith-Waterman score: 236; 25.000% identity (27.636% ungapped) in 304 aa overlap (90-383:146-430) 60 70 80 90 100 110 mKIAA1 ISTSEIGDTEDALQQVEEIGIEKAAMDMTVFLKLQKRVRELEQERKKLQAQLE--KGQQD : . .:: :::. : : :.:: ::: mKIAA4 VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 120 130 140 150 160 170 120 130 140 150 160 170 mKIAA1 SKKGQVEQQNNGLDVDQDADIAYNSLKRQELESENKKLKNDLNELRKAVADQAMQDNSTH :. :.. ... .. ...: :. : :.: .: : .:. .::. . .. .: . .. mKIAA4 SRLGDLYEEEMR-ELRRQVDQLTNDKARVEVERDN--LAEDIMRLREKLQEEMLQREEAE 180 190 200 210 220 230 180 190 200 210 220 230 mKIAA1 SSPDSYSLLLNQLKLANEELEVR----KEEVLILRTQIMNADQRRLSGKNMEPNINARTS :. .:. ... .:: .:: . .::. .:. .. . . ..:... .: ... .. mKIAA4 STLQSFRQDVDNASLARLDLERKVESLQEEIAFLK-KLHDEEIQELQAQIQEQHVQIDVD 240 250 260 270 280 290 240 250 260 270 280 290 mKIAA1 WPNSEKHVDQEDAIEAYHGVCQTNSQ-TEDWGYLNEDGELGLAYQGLKQVARLLEAQLQA . . . .:. . :..: : : .:.: : .. ..:. : . ... : : . mKIAA4 VSKPDLTAALRDVRQQYESVAAKNLQEAEEW-YKSKFADLSEAANRNNDALR----QAKQ 300 310 320 330 340 300 310 320 330 340 mKIAA1 QSLEHEEEVEHLKAQVEALK---EEMDKQQQTFCQTLLLSPEAQVEFGVQQEISRLTNEN .: :....:. : .:.::: : ...:.. . ... : :: . :. :.:: .: mKIAA4 ESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAL--EAA---NYQDTIGRLQDEI 350 360 370 380 390 400 350 360 370 380 390 400 mKIAA1 LDFKELVEKLEKNERKLKKQLKIYMKKVQDLEAAQALAQSDRRHHELTRQVTVQRKEKDF ..:: .. .. :. . :.. : . :.: : mKIAA4 QNMKE---EMARHLREYQDLLNVKM--ALDIEIATYRKLLEGEESRISLPLPTFSSLNLR 410 420 430 440 450 410 420 430 440 450 460 mKIAA1 QGMLEYHKEDEALLIRNLVTDLKPQMLSGTVPCLPAYILYMCIRHADYTNDDLKVHSLLS mKIAA4 ETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 460 470 480 490 >>mKIAA0866 ( 1984 res) mtg01789 (1984 aa) initn: 153 init1: 73 opt: 212 Z-score: 143.0 bits: 38.6 E(): 0.0081 Smith-Waterman score: 228; 24.784% identity (29.040% ungapped) in 464 aa overlap (9-438:1458-1887) 10 20 30 mKIAA1 ENLLMKKELEEERSRYQNLVKEYSQLEQRYENLRDEQT ::........:. : ... ..: . ::. mKIAA0 DKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLLAEEKNISSKYADERDRAE 1430 1440 1450 1460 1470 1480 40 50 60 70 80 90 mKIAA1 PGHRKNPSNQSSLESDSNYPSISTSEIGDTEDALQQVEEIGIEKAAMDMTVFLK--LQKR :.. .. :: . : .... :...... :: :. : : . : mKIAA0 AEAREKETKALSLAR-------ALEEALEAKEELERTNKM--LKAEMEDLVSSKDDVGKN 1490 1500 1510 1520 1530 100 110 120 130 140 mKIAA1 VRELEQERKKLQAQLEKGQQDSKKGQVEQQNNGLDVDQDA----DIAYNSLKRQ------ :.:::. .. :..:.:. : :.:. .. :.. .:: .. ...:: : mKIAA0 VHELEKSKRALETQMEE-----MKTQLEELEDELQATEDAKLRLEVNMQALKGQFERDLQ 1540 1550 1560 1570 1580 1590 150 160 170 180 190 200 mKIAA1 ----ELESENKKLKNDLNELRKAVADQAMQDNSTHSSPDSYSLLLNQLKL-ANEELEVRK . : . ..:. .:.: . . :. : . .. . :..:.: :. .. :. mKIAA0 ARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIKGRE 1600 1610 1620 1630 1640 1650 210 220 230 240 250 mKIAA1 EEVLILRT-QIMNAD-QRRLSGKNMEPNINARTSWPNSEK----HVD----QEDAIEAYH : . :: : . : ::.:. . :: : .: ..: ::: : . mKIAA0 EAIKQLRKLQAQMKDFQRELDDARASRDEIFATSKENEKKAKSLEADLMQLQEDLAAAER 1660 1670 1680 1690 1700 1710 260 270 280 290 300 310 mKIAA1 GVCQTNSQTEDWGYLNEDGELGLAYQG-LKQVARLLEAQLQAQSLEHEEEVEHLKAQVEA . :.. . :. : :. .:. .. :.. : :::.. :: :::.:. ....:: mKIAA0 ARKQADLEKEE---LAEELASSLSGRNTLQDEKRRLEARI-AQL---EEELEEEQGNMEA 1720 1730 1740 1750 1760 320 330 340 350 360 mKIAA1 LKEEMDKQQQTFCQTLLLSPEAQVEFGVQQ--EISRLTNENLDFKELVEKLEKNERKLKK .. :. ... :. :: : .: .. : : .: : . ::: ::.. : .: mKIAA0 MS---DRVRKATLQAEQLSNELATERSTAQKNESARQQLERQN-KELRSKLQEVEGAVKA 1770 1780 1790 1800 1810 1820 370 380 390 400 410 420 mKIAA1 QLKIYMK----KVQDLEAAQALAQSDRRHHELTRQVTVQRKEKDFQGMLEYHKEDEALLI .:: . :. .:: . . : :... :. ....:.: .. .: . ::: mKIAA0 KLKSTVAALEAKIAQLE--EQVEQEAREKQAATK--SLKQKDKKLKEVL-LQVEDE---- 1830 1840 1850 1860 1870 430 440 450 460 470 480 mKIAA1 RNLVTDLKPQMLSGTVPCLPAYILYMCIRHADYTNDDLKVHSLLSSTINGIKKVLKKHND :... . : : .:. mKIAA0 RKMAEQYKEQAEKGNTKVKQLKRQLEEAEEESQRINANRRKLQRELDEATESNEAMGREV 1880 1890 1900 1910 1920 1930 791 residues in 1 query sequences 1768226 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:36:35 2006 done: Mon Mar 27 10:36:36 2006 Scan time: 0.890 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]