FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1824.ptfa, 959 aa vs ./tmplib.26680 library 1768058 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.1855+/-0.00613; mu= 3.1485+/- 0.407 mean_var=232.8080+/-54.876, 0's: 0 Z-trim: 6 B-trim: 2 in 1/35 Lambda= 0.0841 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4167 ( 342 res) mpj04828 ( 342) 229 41 0.00038 mFLJ00045 ( 612 res) mfj40199 ( 612) 210 39 0.0028 >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 165 init1: 106 opt: 229 Z-score: 166.7 bits: 40.8 E(): 0.00038 Smith-Waterman score: 270; 25.157% identity (27.972% ungapped) in 318 aa overlap (62-374:49-339) 40 50 60 70 80 90 mKIAA1 SQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRV : :: . .....:: :: .::.:.. : . mKIAA4 HLPAERAQSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNG-EWLASSAADALI 20 30 40 50 60 70 100 110 120 130 140 150 mKIAA1 LLWHMEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDV ..: : . : : : : .: .:..: .... :...:. . . :..:.. : . mKIAA4 IIWG---AYDGNCKKT-LYG-HSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKT 80 90 100 110 120 130 160 170 180 190 200 210 mKIAA1 F-AHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNP . .: : :. . .: . :...:.: : : ::... . . :. . . . .: :: mKIAA4 LKGHSDFVFCCDFNPPS-NLIVSGSFDESVKIWEVKTGKCLKT--LSAHSDPISAVNFN- 140 150 160 170 180 220 230 240 250 260 mKIAA1 VEPRLLATANSKEGVG-LWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLP . :.... : .:. .:: . : :: .. . . :.:. :: .:. mKIAA4 CNGSLIVSG-SYDGLCRIWDAASGQC--LRTLADEGNPPVSFVKFSPNGKYILTATLDNT 190 200 210 220 230 240 270 280 290 300 310 320 mKIAA1 PVLYDIHSRLPVFQ-FDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKIPADPEA :.: .:: .. . .. . : . : .: . ...:::.: .:.:.. . mKIAA4 LKLWD-YSRGRCLKTYTGHKNEKYCLFASFSVTGRK--WVVSGSEDNMVYIWNLQTK--- 250 260 270 280 290 330 340 350 360 370 380 mKIAA1 GGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVE--KIIKIWSPYKQPGCTGDLD ..:. :.:: ..: .. .: .: :...: : ::.:: mKIAA4 ----EIVQR----LQGHTDVVISAACHPTKNIIASAALENDKTIKVWSSDC 300 310 320 330 340 390 400 410 420 430 440 mKIAA1 GRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREIEGWSSD >>mFLJ00045 ( 612 res) mfj40199 (612 aa) initn: 141 init1: 70 opt: 210 Z-score: 151.1 bits: 38.7 E(): 0.0028 Smith-Waterman score: 211; 23.708% identity (26.897% ungapped) in 329 aa overlap (65-379:309-612) 40 50 60 70 80 90 mKIAA1 GLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLW : : :::..:: :.. :..:: :::: :: mFLJ00 IPVPQDIMDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSP-GSRLLATGGMDRRVKLW 280 290 300 310 320 330 100 110 120 130 140 150 mKIAA1 HMEQAIHSRVK-PIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFA .:. .. . .:.: . ..: . :.:... .....:: . :.. . ... mFLJ00 ---EAFGDKCEFKGSLSGSN-AGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLT 340 350 360 370 380 390 160 170 180 190 200 mKIAA1 -HEDAVYGLSVSPVNDNI-FASSSDDGRVLIWDIRES--PHGEPFC-------LANYPSA : : ::.. . :: ..:.: : . .::.: . . . .: :.. .. mFLJ00 GHSGKV--LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCEEMQSLCVLMVFGFLSGIKTV 400 410 420 430 440 450 210 220 230 240 250 260 mKIAA1 FHSVMFNPV--EPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQ : . : . . . ... . . .::::. :..: :. .:... : . :. mFLJ00 FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSE--SVVREMELLGKITALDL--NPERTE 460 470 480 490 500 270 280 290 300 310 320 mKIAA1 LLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMW ::. : . :... :. :. . :. : .:. .:: . .::.: mFLJ00 LLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRVVFSPD-GSYVAAGSAEGSLYVW 510 520 530 540 550 560 330 340 350 360 370 380 mKIAA1 KIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPG .. .: . .:.. : : : .: : . : . : . .:. :: mFLJ00 SV----LTGKVEKVLS------KQHSSSINAVAWAPSGLHVVSVDKGSRAVLWA---QP 570 580 590 600 610 390 400 410 420 430 440 mKIAA1 CTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREI 959 residues in 1 query sequences 1768058 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:53:56 2006 done: Mon Mar 27 10:53:57 2006 Scan time: 1.000 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]