FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA1824.ptfa, 959 aa
vs ./tmplib.26680 library
1768058 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 8.1855+/-0.00613; mu= 3.1485+/- 0.407
mean_var=232.8080+/-54.876, 0's: 0 Z-trim: 6 B-trim: 2 in 1/35
Lambda= 0.0841
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA4167 ( 342 res) mpj04828 ( 342) 229 41 0.00038
mFLJ00045 ( 612 res) mfj40199 ( 612) 210 39 0.0028
>>mKIAA4167 ( 342 res) mpj04828 (342 aa)
initn: 165 init1: 106 opt: 229 Z-score: 166.7 bits: 40.8 E(): 0.00038
Smith-Waterman score: 270; 25.157% identity (27.972% ungapped) in 318 aa overlap (62-374:49-339)
40 50 60 70 80 90
mKIAA1 SQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRV
: :: . .....:: :: .::.:.. : .
mKIAA4 HLPAERAQSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNG-EWLASSAADALI
20 30 40 50 60 70
100 110 120 130 140 150
mKIAA1 LLWHMEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDV
..: : . : : : : .: .:..: .... :...:. . . :..:.. : .
mKIAA4 IIWG---AYDGNCKKT-LYG-HSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKT
80 90 100 110 120 130
160 170 180 190 200 210
mKIAA1 F-AHEDAVYGLSVSPVNDNIFASSSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNP
. .: : :. . .: . :...:.: : : ::... . . :. . . . .: ::
mKIAA4 LKGHSDFVFCCDFNPPS-NLIVSGSFDESVKIWEVKTGKCLKT--LSAHSDPISAVNFN-
140 150 160 170 180
220 230 240 250 260
mKIAA1 VEPRLLATANSKEGVG-LWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQLLALRRRLP
. :.... : .:. .:: . : :: .. . . :.:. :: .:.
mKIAA4 CNGSLIVSG-SYDGLCRIWDAASGQC--LRTLADEGNPPVSFVKFSPNGKYILTATLDNT
190 200 210 220 230 240
270 280 290 300 310 320
mKIAA1 PVLYDIHSRLPVFQ-FDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKIPADPEA
:.: .:: .. . .. . : . : .: . ...:::.: .:.:.. .
mKIAA4 LKLWD-YSRGRCLKTYTGHKNEKYCLFASFSVTGRK--WVVSGSEDNMVYIWNLQTK---
250 260 270 280 290
330 340 350 360 370 380
mKIAA1 GGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVE--KIIKIWSPYKQPGCTGDLD
..:. :.:: ..: .. .: .: :...: : ::.::
mKIAA4 ----EIVQR----LQGHTDVVISAACHPTKNIIASAALENDKTIKVWSSDC
300 310 320 330 340
390 400 410 420 430 440
mKIAA1 GRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREIEGWSSD
>>mFLJ00045 ( 612 res) mfj40199 (612 aa)
initn: 141 init1: 70 opt: 210 Z-score: 151.1 bits: 38.7 E(): 0.0028
Smith-Waterman score: 211; 23.708% identity (26.897% ungapped) in 329 aa overlap (65-379:309-612)
40 50 60 70 80 90
mKIAA1 GLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLLW
: : :::..:: :.. :..:: :::: ::
mFLJ00 IPVPQDIMDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSP-GSRLLATGGMDRRVKLW
280 290 300 310 320 330
100 110 120 130 140 150
mKIAA1 HMEQAIHSRVK-PIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFA
.:. .. . .:.: . ..: . :.:... .....:: . :.. . ...
mFLJ00 ---EAFGDKCEFKGSLSGSN-AGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLT
340 350 360 370 380 390
160 170 180 190 200
mKIAA1 -HEDAVYGLSVSPVNDNI-FASSSDDGRVLIWDIRES--PHGEPFC-------LANYPSA
: : ::.. . :: ..:.: : . .::.: . . . .: :.. ..
mFLJ00 GHSGKV--LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCEEMQSLCVLMVFGFLSGIKTV
400 410 420 430 440 450
210 220 230 240 250 260
mKIAA1 FHSVMFNPV--EPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSVRFNSNGTQ
: . : . . . ... . . .::::. :..: :. .:... : . :.
mFLJ00 FAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSE--SVVREMELLGKITALDL--NPERTE
460 470 480 490 500
270 280 290 300 310 320
mKIAA1 LLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMW
::. : . :... :. :. . :. : .:. .:: . .::.:
mFLJ00 LLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRVVFSPD-GSYVAAGSAEGSLYVW
510 520 530 540 550 560
330 340 350 360 370 380
mKIAA1 KIPADPEAGGIGRVVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPG
.. .: . .:.. : : : .: : . : . : . .:. ::
mFLJ00 SV----LTGKVEKVLS------KQHSSSINAVAWAPSGLHVVSVDKGSRAVLWA---QP
570 580 590 600 610
390 400 410 420 430 440
mKIAA1 CTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGLSHDYANQSVQEDPRMMAFFDSLVRREI
959 residues in 1 query sequences
1768058 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:53:56 2006 done: Mon Mar 27 10:53:57 2006
Scan time: 1.000 Display time: 0.040
Function used was FASTA [version 3.4t11 Apr 17, 2002]