FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0439.ptfa, 442 aa vs ./tmplib.26680 library 1768575 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.7901+/-0.00581; mu= 7.4478+/- 0.386 mean_var=175.4711+/-41.542, 0's: 0 Z-trim: 16 B-trim: 8 in 1/35 Lambda= 0.0968 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0093 ( 904 res) mbg10506 ( 904) 979 149 1.5e-36 mKIAA4011 ( 876 res) mpm01139 ( 876) 232 44 3.8e-05 mKIAA0080 ( 353 res) mbh01670 ( 353) 194 39 0.00082 mKIAA0322 ( 1177 res) mbg19003 (1177) 199 40 0.0011 mKIAA1301 ( 1455 res) mbg18866 (1455) 194 39 0.0021 mKIAA1342 ( 499 res) mid23032 ( 499) 182 37 0.0033 mKIAA4194 ( 320 res) mbg12940 ( 320) 174 36 0.0054 >>mKIAA0093 ( 904 res) mbg10506 (904 aa) initn: 786 init1: 581 opt: 979 Z-score: 748.5 bits: 148.7 E(): 1.5e-36 Smith-Waterman score: 1000; 50.784% identity (54.000% ungapped) in 319 aa overlap (17-333:114-415) 10 20 30 40 mKIAA0 TSLPLPRSLLEEVFLPGICDPYVKLSLYVADENRELALVQTKTIKK : ::::...:: . :. :::::::: mKIAA0 DPYLELHNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLY-DPMSGILTSVQTKTIKK 90 100 110 120 130 140 50 60 70 80 90 100 mKIAA0 TLNPKWNEEFYFRVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTF .::::::::. ::: :. ::.::::::::::::::::::::::: ::::.: ::::::: mKIAA0 SLNPKWNEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTF 150 160 170 180 190 200 110 120 130 140 150 160 mKIAA0 KDFLLRPRSHKSRVKGFLRLKMAYMPKNGGQDEENSEQRDDMEHGWEVVDSNDSASQHQE :::.:.::::::::::.:::::.:.::::..:: :..: ...: :: :.:. :.:.. . mKIAA0 KDFVLHPRSHKSRVKGYLRLKMTYLPKNGSEDE-NADQAEELEPGWVVLDQPDAATHLPH 210 220 230 240 250 260 170 180 190 200 210 220 mKIAA0 ELPPPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSLMDVSSESDNNIRQINQEAAHRR : ::::::::. : :::::::::..: :::.::: : .. ::. :.. :.: mKIAA0 PPEPSPLPPGWEERQDVLGRTYYVNHESRRTQWKRPSPDDDLTDEDNDDMQLQ---AQRA 270 280 290 300 310 230 240 250 260 270 280 mKIAA0 FRSRRHISEDLE-PEASEGGGEGPEPWETISEEMNMAGDSLSLALPPPPASPVSRTSPQE : .::.::::.. :. :. :: :: . :. : . . :. ::.. .. . . mKIAA0 FTTRRQISEDVDGPDNRES----PENWEIVREDENT--EYSGQAVQSPPSGHIDVQT--H 320 330 340 350 360 370 290 300 310 320 330 340 mKIAA0 LSEEVSRRLQITPD-SNGEQFSSLIQREPSSRLRSCSVTDTVAEQAHLPPVTNTHFQSSA :.:: . :: . . .... .: . .. :..: :: :: mKIAA0 LAEEFNTRLAVCGNPATSQPVTSSNHSSRGGSLQTC----IFEEQPTLPVLLPTSSGLPP 380 390 400 410 420 350 360 370 380 390 400 mKIAA0 GFLFWFGLVWFGSVWVFLFLVFGLVLFCFVGFCFLVFLFCFVFCFGGLVWGFFLGVFFCF mKIAA0 GWEEKQDDRGRSYYVDHNSKTTTWSKPTMQDDPRSKIPAHLRGKTDSNDLGPLPPGWEER 430 440 450 460 470 480 >>mKIAA4011 ( 876 res) mpm01139 (876 aa) initn: 212 init1: 212 opt: 232 Z-score: 184.8 bits: 44.3 E(): 3.8e-05 Smith-Waterman score: 232; 37.069% identity (39.815% ungapped) in 116 aa overlap (143-253:306-418) 120 130 140 150 160 170 mKIAA0 PRSHKSRVKGFLRLKMAYMPKNGGQDEENSEQRDDMEHGWEVVDSNDSASQHQEELPPPP ::: : .:: : : . .. : : mKIAA4 SGLIIPLTISGGSGPRPLNTVSQAPLPPGWEQRVD-QHGR--VYYVDHVEKRTTWDRPEP 280 290 300 310 320 330 180 190 200 210 220 230 mKIAA0 LPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSLMDVSSESDNNIRQINQEAAHRRFRSRR- ::::::..:::.:: :::.: .:.: :.::.: .: . . .... . ..: ..: .: mKIAA4 LPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLESVRNYEQWQLQRSQLQGAMQQFNQRFI 340 350 360 370 380 390 240 250 260 270 280 mKIAA0 HISEDL--EPEASEGGGEGPEP--WETISEEMNMAGDSLSLALPPPPASPVSRTSPQELS . ..:: . .: :: : :: mKIAA4 YGNQDLFATSQNKEFDPLGPLPPGWEKRTDSNGRVYFVNHNTRITQWEDPRSQGQLNEKP 400 410 420 430 440 450 >>mKIAA0080 ( 353 res) mbh01670 (353 aa) initn: 106 init1: 106 opt: 194 Z-score: 160.8 bits: 38.6 E(): 0.00082 Smith-Waterman score: 194; 31.624% identity (35.238% ungapped) in 117 aa overlap (20-132:117-225) 10 20 30 40 mKIAA0 TSLPLPRSLLEEVFLPGICDPYVKLSLYVADENRELALVQTKTIKKTLN :::.:... ..: :.:....:::. mKIAA0 VDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHR----VKTRVLRKTLD 90 100 110 120 130 140 50 60 70 80 90 100 mKIAA0 PKWNEEFYFRVNPSNHR----LLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYT : ..: : : : : .. : : :.. .:..::: .:.: :::. . ::. . mKIAA0 PVFDETFTFYVIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLAGV---DPSTGKVQL 150 160 170 180 190 110 120 130 140 150 160 mKIAA0 FKDFLLRPRSHKSRVKGFLRLKMAYMPKNGGQDEENSEQRDDMEHGWEVVDSNDSASQHQ .:.. : .: .: :.....:.: mKIAA0 TRDIIKR-NIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNV 200 210 220 230 240 250 >>mKIAA0322 ( 1177 res) mbg19003 (1177 aa) initn: 170 init1: 170 opt: 199 Z-score: 158.4 bits: 39.9 E(): 0.0011 Smith-Waterman score: 204; 30.159% identity (33.333% ungapped) in 126 aa overlap (135-248:361-486) 110 120 130 140 150 160 mKIAA0 TFKDFLLRPRSHKSRVKGFLRLKMAYMPKNGGQDEENSEQRDDMEHGWEVVDSNDSASQH ::. ...: . . :. . ... : . mKIAA0 ESVPDSVQSPELDPESTNGAGPWQDELAAPGGNAARSTEGECPILHNSQPISQLPSLRPE 340 350 360 370 380 390 170 180 190 200 210 mKIAA0 QEELP--PPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSLMD-----VSSESDNNIRQ ... : ::::.:: ..:. ::..::.: ::.: :.:::. . : : ....: mKIAA0 HHHYPTIDEPLPPNWEARIDSHGRVFYVDHINRTTTWQRPSMAPTPDGMIRSGSVHQMEQ 400 410 420 430 440 450 220 230 240 250 260 270 mKIAA0 INQEAAH-RRFRSRRHISEDLEPEASE----GGGEGPEPWETISEEMNMAGDSLSLALPP .:.. . .: . .. :: . :: ::: : mKIAA0 LNRRYQNIQRTMATERAEEDSGNQNSEQIPDGGGGGGGGSDSEAESSQSSLDLRREGSLS 460 470 480 490 500 510 280 290 300 310 320 330 mKIAA0 PPASPVSRTSPQELSEEVSRRLQITPDSNGEQFSSLIQREPSSRLRSCSVTDTVAEQAHL mKIAA0 PVNSQKVTLLLQSPAVKFITNPEFFTVLHANYSAYRVFTSSTCLKHMILKVRRDARNFER 520 530 540 550 560 570 >>mKIAA1301 ( 1455 res) mbg18866 (1455 aa) initn: 177 init1: 177 opt: 194 Z-score: 153.5 bits: 39.3 E(): 0.0021 Smith-Waterman score: 194; 38.272% identity (42.466% ungapped) in 81 aa overlap (173-247:692-770) 150 160 170 180 190 200 mKIAA0 EQRDDMEHGWEVVDSNDSASQHQEELPPPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP :::.:: ..:. :: .::.: ::.: :.:: mKIAA1 GGSQTNGHQPLRSLPSVRQDVSRYQRVDEALPPNWEARIDSHGRIFYVDHVNRTTTWQRP 670 680 690 700 710 720 210 220 230 240 250 mKIAA0 SLMDVSS--ESDNNIRQINQEAAHRRFRSRRHISEDLEPE----ASEGGGEGPEPWETIS . . . . .:.:.:..: .::..: :. . .:: : .:.:: mKIAA1 TAPPAPQVLQRSNSIQQMEQ--LNRRYQSIRRTMTNERPEENTSAIDGAGEEADFHQASA 730 740 750 760 770 260 270 280 290 300 310 mKIAA0 EEMNMAGDSLSLALPPPPASPVSRTSPQELSEEVSRRLQITPDSNGEQFSSLIQREPSSR mKIAA1 DFRRENVLPHSTSRSRLTLLLQSPPVKFLISPEFFTVLHSNPSAYRMFTNNTCLKHMITK 780 790 800 810 820 830 >>mKIAA1342 ( 499 res) mid23032 (499 aa) initn: 120 init1: 120 opt: 182 Z-score: 149.9 bits: 37.1 E(): 0.0033 Smith-Waterman score: 182; 31.304% identity (34.951% ungapped) in 115 aa overlap (20-130:265-371) 10 20 30 40 mKIAA0 TSLPLPRSLLEEVFLPGICDPYVKLSLYVADENRELALVQTKTIKKTLN :::.:... ..: :.:....:::. mKIAA1 LEYNFEKKAFVVNIKEAQGLPAMDEQSMTSDPYIKMTILPEKKHR----VKTRVLRKTLD 240 250 260 270 280 290 50 60 70 80 90 100 mKIAA0 PKWNEEFYFRVNPSNH----RLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYT : ..: : : : : : : :.. .:..::: .:.: .::: . : : mKIAA1 PVFDETFTFYGIPYPHIQELSLHFTVLSFDRFSRDDVIGEVLIPLSGIELSDGKM---LM 300 310 320 330 340 110 120 130 140 150 160 mKIAA0 FKDFLLRPRSHKSRVKGFLRLKMAYMPKNGGQDEENSEQRDDMEHGWEVVDSNDSASQHQ .... : ..:: .: : ... :. mKIAA1 TREIIKR-NAKKSSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY 350 360 370 380 390 400 >>mKIAA4194 ( 320 res) mbg12940 (320 aa) initn: 117 init1: 77 opt: 174 Z-score: 146.2 bits: 35.7 E(): 0.0054 Smith-Waterman score: 174; 28.226% identity (31.250% ungapped) in 124 aa overlap (15-135:72-186) 10 20 30 40 mKIAA0 TSLPLPRSLLEEVFLPGICDPYVKLSLYVADENRELALVQTKTI . : :::::. : . :.... .::. mKIAA4 GKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFL-LPDKKKKY---ETKVH 50 60 70 80 90 50 60 70 80 90 100 mKIAA0 KKTLNPKWNEEFYFRV---NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTME .::::: .:: : :.: . ... :.. ..: .:... :..:.: ::.. . .: : mKIAA4 RKTLNPAFNETFTFKVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEE 100 110 120 130 140 150 110 120 130 140 150 160 mKIAA0 RPYTFKDFLLRPRSHKSRVKGFLRLKMAYMPKNGGQDEENSEQRDDMEHGWEVVDSNDSA ..:. . . .. : . .. :.: : mKIAA4 ----WRDLQGGEKEEPEKL-GDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVK 160 170 180 190 200 210 170 180 190 200 210 220 mKIAA0 SQHQEELPPPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSLMDVSSESDNNIRQINQE mKIAA4 IHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEAI 220 230 240 250 260 270 442 residues in 1 query sequences 1768575 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:20:46 2006 done: Mon Mar 27 10:20:47 2006 Scan time: 0.640 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]