FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0642.ptfa, 1048 aa vs ./tmplib.26680 library 1767969 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.6241+/-0.0108; mu= -16.7404+/- 0.718 mean_var=643.6024+/-152.748, 0's: 0 Z-trim: 24 B-trim: 0 in 0/36 Lambda= 0.0506 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4110 ( 737 res) mid06095 ( 737) 1228 105 3.9e-23 mKIAA0687 ( 1310 res) mpg00180 (1310) 306 38 0.0097 >>mKIAA4110 ( 737 res) mid06095 (737 aa) initn: 1705 init1: 647 opt: 1228 Z-score: 507.8 bits: 105.1 E(): 3.9e-23 Smith-Waterman score: 1805; 38.690% identity (54.469% ungapped) in 1008 aa overlap (62-1048:1-737) 40 50 60 70 80 90 mKIAA0 GSGSIDDDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDFRPVEEGEE :::: ::: :: ::::::.::: .:: :: mKIAA4 GAFLPLKKGPKEAIPEEQELDFRGLEEEEE 10 20 30 100 110 120 130 140 150 mKIAA0 RSDSDSSHNEEAKEPDKTNRREGEKTDRAGAEASEEVPQTSLSSARPGTPSDHQPQEATQ : .::.. . :. . .: ::. : . :: :.. : .: mKIAA4 ----------EEEEPSEGV--DEERPEAGGKEATPLPPPENSSS--PSSLPALGPLWTT- 40 50 60 70 160 170 180 190 200 210 mKIAA0 FERKDEPKAEQVEKAEEENRSENSLSAKVPSRGDETVPASQQPSTPLPPDTASPLLILSP .: .: ::: :..::: : .: : :: mKIAA4 ----NEEGGEAVEKELP------------PAEGDELRGLSLSPR------------ISSP 80 90 100 220 230 240 250 260 270 mKIAA0 PVPTPSSASRPVETAAVEAPGMSSVSTEPDDEEGLKHLEQQAEKMVAYLQDSALDDERLT : : :: . .::::::::.:.:::.:: ::::.:..:..: mKIAA4 PGP----------------PG------DLEDEEGLKHLQQEAEKLVASLQDSSLEEEQFT 110 120 130 140 280 290 300 310 320 mKIAA0 SKLQ----EHRAKGVSIPLMHEAMQKWYYKDPQGEIQGSFNNQEMAEWFQAGYFTMSLLV . .: .: . ....:: : : .::.:::::::::: :..::::::::::::.::::: mKIAA4 AAMQTQGLRHSTAATALPLSHGAARKWFYKDPQGEIQGPFTTQEMAEWFQAGYFSMSLLV 150 160 170 180 190 200 330 340 350 360 370 380 mKIAA0 KRACDESFQPLGDIMKMWGRVPFSPGPAPPPHMGELDQERLTRQQELT--ALYQ-MQHLQ ::.:::.:::::...::::::::.:::.::: .:..::::: .::::. :::: .:: . mKIAA4 KRGCDEGFQPLGEVIKMWGRVPFAPGPSPPPLLGNMDQERLKKQQELAAAALYQQLQHQH 210 220 230 240 250 260 390 400 410 420 430 440 mKIAA0 YQQFLIQQQYAQVLAQQQKAA---LSSQQQQQLALLLQQFQALKM-RMSDQNIIPSVTRS . :.. ..: : . ..::: :. :::::. .:::.:::: : .:::..:...:: mKIAA4 FLQLVGSRQLPQCTTLREKAAMGDLTPPQQQQLTTFLQQLQALKTPRGGDQNLLPTMSRS 270 280 290 300 310 320 450 460 470 480 490 500 mKIAA0 VSVPDTGSIWELQPAASQPAVWEGGSVWDLPLDTTAPGPSLEQLQQLEKAKAAKLEQERR .::::.: .:.:. .::. . :. :.::.:..... :: ::::: .: :::: mKIAA4 LSVPDSGPLWDLHTSASSQSGGEA-SLWDIPINSSTQGPILEQLQLQHKF------QERR 330 340 350 360 370 510 520 530 540 550 560 mKIAA0 EAEMRAKREEEERKRQEELRRQQEEILRRQQEEERKRREEEELARRKQEEALRRQREQEI :.:.:::::::::::.:: ::::.. ::::...:.::::: :::: mKIAA4 EVELRAKREEEERKRREEKRRQQQQ----QQEEQKRRQEEEELFRRKQ------------ 380 390 400 410 420 570 580 590 600 610 620 mKIAA0 ALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWAREEEEAQRRLE mKIAA4 ------------------------------------------------------------ 630 640 650 660 670 680 mKIAA0 ENRLRMEEEAARLRHEEEERKRKELELQRQKDLMRQRQQQQEALRRLQQQQQQQQLAQMK .:: :: : .: :::: .. mKIAA4 ---------------------------------VRQ----QELLLKLLQQQQATNVPVPP 430 440 690 700 710 720 730 740 mKIAA0 LPSSSTWGQQSNTATCQSQATLSLAEIQKLEEERERQLREEQRRQQRELMKALQQQQQQQ ::: mKIAA4 APSSPP------------------------------------------------------ 450 750 760 770 780 790 800 mKIAA0 QQQKLSGWGNVSKPAGTTKSLLEIQQEEARQMQKQQQQQQQQQQQHQQSNRARNSTHSNL :....: . . :.:::.:.: ::..:: .. ::. .: mKIAA4 -----PLWAGLAKQGLSMKTLLELQMESERQLHKQAAPREPL--------RAQAPNH--- 460 470 480 490 810 820 830 840 850 mKIAA0 HTSLGNSVWGSINTGPSNQWASELVSSIWSNAD----TKNSNMGFWDDAVKEVGP--RN- ...::. ....: :::.:: .. .:.. : ....:.:.:.:..: : :. mKIAA4 RVQLGG-----LGSAPLNQWVSE-AGPLWGGPDKSGGSSGGNLGLWEDTLKSGGSLARSL 500 510 520 530 540 860 870 880 890 900 910 mKIAA0 STNKNKNNASLSKSVG-VSNRQ-NKKVEEEEKLLKLFQGVNKAQDGFTQWCEQMLHALNT . ...... ::: : . .:.: ::.:::::::::.::. . :::::::::::::.:.: mKIAA4 GLKSSRSSPSLSDSYSHLSGRPVRKKTEEEEKLLKLLQGIPRPQDGFTQWCEQMLHTLST 550 560 570 580 590 600 920 930 940 950 960 970 mKIAA0 ANNLDVPTFVSFLKEVESPYEVHDYTRAYLGDTSEAKEFAKQFLERRAKQKVNQQRQQQQ :..:::: :..::::::::.:::: :. :::: :::::::::::::::::..::::::: mKIAA4 AGSLDVPMAVAILKEVESPYDVHDYIRSCLGDTLEAKEFAKQFLERRAKQKASQQRQQQQ 610 620 630 640 650 660 980 990 1000 1010 1020 1030 mKIAA0 QQQQQQDS-VWGMNHSTLHSVFQTNQSNNQQSNFEAVQSGKKKKKQKMVRADPSLLGFSV ::::::.. .: .. ..:...::.:.:.. . ...: :.. :...:::.::.:. mKIAA4 QQQQQQQQEAW-LSSTSLQTAFQANHSTKLGPG----EGSKAKRRALMLHSDPSILGYSL 670 680 690 700 710 720 1040 mKIAA0 NASSERLNMGEIETLDDY .. : ::::..::: mKIAA4 HGPS-----GEIESVDDY 730 >>mKIAA0687 ( 1310 res) mpg00180 (1310 aa) initn: 597 init1: 214 opt: 306 Z-score: 141.5 bits: 38.2 E(): 0.0097 Smith-Waterman score: 362; 32.862% identity (36.614% ungapped) in 283 aa overlap (407-682:260-520) 380 390 400 410 420 430 mKIAA0 LYQMQHLQYQQFLIQQQYAQVLAQQQKAALSSQQQQQLALLLQQFQALKMRMSDQNIIPS :..: . .. .: . ..:.. .. : mKIAA0 PPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDR 230 240 250 260 270 280 440 450 460 470 480 490 mKIAA0 VTRSVSVPD------TGSIWELQPAASQPAVWEGGSVWDLPLDTTAPGPSLEQLQQLEKA . .. . : .:: : . . : . : .:. ..: ..: : .::: .: mKIAA0 TRKKRGEKDETEYEYSGSEEEEEEVPEQEG--EPSSIVNVPGESTLRRDFL-RLQQENKE 290 300 310 320 330 340 500 510 520 530 540 550 mKIAA0 KAAKLEQERREAEMRAKREEEERKRQEELRRQQEEILRRQQEEERKRREEEELARRKQEE .. :.... :.. ::.:: ::: .::. : .:..:..:: ::. .:...: mKIAA0 RSEALRRQQLLQEQQL-REQEEYKRQLLAERQK----RIEQQKEQRRRLEEQ--QRRERE 350 360 370 380 390 560 570 580 590 600 610 mKIAA0 ALRRQREQEIALRRQREEEERQQQEEALRRLEERRREEEERRKQEELLRKQEEEAAKWAR : :::.:.: .:.::.::... :: ::.::.::::::. :: :. :.: : mKIAA0 A-RRQQERE---QRRREQEEKRRLEE----LERRRKEEEERRRAEEEKRRVEREQEYIRR 400 410 420 430 440 450 620 630 640 650 660 mKIAA0 EEEEAQRRLEENRLRMEEEAARLRHEEEERKRKELELQRQKD-LMRQRQQQQEALRRLQQ . :: ::.:: . .. .: : : : . .:.: .:: . :.:: ::.: : ::. mKIAA0 QLEEEQRHLEILQQQLLQEQAMLL----ECRWREMEEHRQAERLQRQLQQEQAYLLSLQH 460 470 480 490 500 670 680 690 700 710 720 mKIAA0 QQQQQQLAQMKLPSSSTWGQQSNTATCQSQATLSLAEIQKLEEERERQLREEQRRQQREL .... . :. : mKIAA0 DHRRPHAQQQPPPPQQQERSKPSFHAPEPKPHYDPADRAREVQWSHLASLKNNVSPVSRS 510 520 530 540 550 560 1048 residues in 1 query sequences 1767969 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:25:12 2006 done: Mon Mar 27 10:25:13 2006 Scan time: 1.090 Display time: 0.120 Function used was FASTA [version 3.4t11 Apr 17, 2002]