FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0572.ptfa, 1992 aa
 vs ./tmplib.26680 library

1767025 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.2367+/-0.00548; mu= 10.2974+/- 0.365
 mean_var=194.3400+/-44.663, 0's: 0 Z-trim: 2  B-trim: 8 in 1/35
 Lambda= 0.0920

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4094  ( 386 res)   mni24090                   ( 386)  473   76 2.1e-14


>>mKIAA4094  ( 386 res)   mni24090                        (386 aa)
 initn: 458 init1: 153 opt: 473  Z-score: 351.0  bits: 76.1 E(): 2.1e-14
Smith-Waterman score: 473;  31.118% identity (32.288% ungapped) in 331 aa overlap (648-972:39-363)

       620       630       640       650       660       670       
mKIAA0 EEKYRLLDQRDRIMRQARVKRTDLDKARAFVGTCPDMCPEKERYLRETRSQLSVFEVVPG
                                     .: ::::::  ::  :: . .:  .:: ::
mKIAA4 QDAVPRFRWPGDAECASSTHTPTMSGCKLPMGLCPDMCPAAERARRERERRLHRLEVEPG
       10        20        30        40        50        60        

           680       690       700       710       720       730   
mKIAA0 ----TDQVDHAAAVKEYSRSSADQEEPLPHELRPSAVLSRTMDYLVTQIMDQKEGSLRDW
           . ..:   .:::::: .: . .: :  :::  ::  :. ::. ..  . . :  . 
mKIAA4 GRGNAPRADPKRTVKEYSRPAAGKPRPPPSLLRPPPVLLATVRYLAGEVAGRGDVSCAEV
       70        80        90       100       110       120        

           740       750       760        770       780       790  
mKIAA0 YDFVWNRTRGIRKDITQQHLCDPLTVSLIEKC-TRFHIHCAHFMCEEPMSSFDAKINNEN
        .:: .: :..: :.. : . :  .....:   . .    :.   ::  .. :  . . .
mKIAA4 ASFVADRLRAVRLDLSLQGVDDADAATVLEAALATLLAVVARVRPEETRGAADPVLLQTQ
      130       140       150       160       170       180        

            800       810       820       830       840       850  
mKIAA0 MTKCLQSLKEMYQDLRNKGVFCASEAEFQGYNVLLNLNKGDILREVQQFHPDVRNSPEVN
       . . . ::.. :   :.:: .   .: :::  .: ::.. . :.:: :.   .:  : ..
mKIAA4 VQEGFGSLRRCYA--RGKGPY-PRQAAFQGLFLLYNLGSVEALQEVLQLPAALRACPPLQ
      190       200          210       220       230       240     

            860       870       880       890       900       910  
mKIAA0 FAVQAFAALNSNNFVRFFKLVQSASYLNACLLHCYFNQIRKDALRALNVAYTVSTRRSTV
        :. . ::.  .: .:.:.:...  ::..: .. ...  :. ::  :. :  .:: .. .
mKIAA4 AALAVDAAFREDNHARLFRLLRTLPYLQSCAVQEHIGYARRKALARLSRA--LSTPKGQT
         250       260       270       280       290         300   

            920       930       940       950       960        970 
mKIAA0 FPLDGVVRMLLFRDSEEATNFLNYHGLTVADGCVELNRSAFLEPEGLCK-ARKSVFIGRK
       .::: . ..: .   .:: .. . ::::.    : . :. . : :::   .   ...: :
mKIAA4 LPLDFIEHFLALDGLQEARDLCQAHGLTLDKDRVVFLRGQYSE-EGLPPPGAYHILVGNK
           310       320       330       340        350       360  

             980       990      1000      1010      1020      1030 
mKIAA0 LTVSVGEVVNGGPLPPVPRHTPVCSFNSQNKYVGESLATELPISTQRAGGDPAGGGRGED
       :                                                           
mKIAA4 LQGHTLEDVVMAEEGDIHRPGSAA                                    
            370       380                                          




1992 residues in 1 query   sequences
1767025 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:23:22 2006 done: Mon Mar 27 10:23:23 2006
 Scan time:  1.440 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]