# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg08582.fasta.nr -Q ../query/mKIAA1203.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1203, 284 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7911074 sequences Expectation_n fit: rho(ln(x))= 6.0307+/-0.000202; mu= 5.1182+/- 0.011 mean_var=124.3965+/-22.965, 0's: 30 Z-trim: 59 B-trim: 0 in 0/66 Lambda= 0.114993 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148685303|gb|EDL17250.1| mCG67204 [Mus musculus (1211) 1787 307.7 6.3e-81 gi|82907597|ref|XP_357781.3| PREDICTED: ubiquitin (1344) 1787 307.8 6.7e-81 gi|149068029|gb|EDM17581.1| ubiquitin specific pro (1089) 1710 294.9 4.1e-77 gi|193787404|dbj|BAG52610.1| unnamed protein produ ( 645) 1457 252.7 1.2e-64 gi|119576240|gb|EAW55836.1| ubiquitin specific pep ( 909) 1457 252.9 1.6e-64 gi|109127891|ref|XP_001087999.1| PREDICTED: simila (1293) 1459 253.3 1.6e-64 gi|119576239|gb|EAW55835.1| ubiquitin specific pep (1100) 1457 252.9 1.8e-64 gi|134047944|sp|Q70CQ4.2|UBP31_HUMAN RecName: Full (1352) 1457 253.0 2e-64 gi|40788185|emb|CAE51935.2| ubiquitin-specific pro (1352) 1457 253.0 2e-64 gi|194219144|ref|XP_001498764.2| PREDICTED: ubiqui (1317) 1404 244.2 8.9e-62 gi|73958749|ref|XP_547094.2| PREDICTED: similar to (1250) 1382 240.6 1.1e-60 gi|126334974|ref|XP_001377884.1| PREDICTED: simila (1382) 1182 207.4 1.1e-50 gi|149632234|ref|XP_001509900.1| PREDICTED: simila (1226) 1130 198.7 4.1e-48 gi|224070126|ref|XP_002196148.1| PREDICTED: ubiqui (1135) 995 176.3 2.1e-41 gi|189517300|ref|XP_692912.3| PREDICTED: similar t (1295) 540 100.9 1.2e-18 gi|47220072|emb|CAG12220.1| unnamed protein produc ( 890) 388 75.5 3.7e-11 gi|47225944|emb|CAG04318.1| unnamed protein produc ( 850) 343 68.0 6.4e-09 gi|126321338|ref|XP_001379356.1| PREDICTED: hypoth ( 359) 303 61.0 3.5e-07 gi|109463712|ref|XP_001078830.1| PREDICTED: hypoth ( 426) 301 60.7 5e-07 gi|126343180|ref|XP_001373977.1| PREDICTED: hypoth (1008) 279 57.5 1.1e-05 gi|189526683|ref|XP_001919147.1| PREDICTED: hypoth ( 370) 271 55.7 1.4e-05 gi|126344041|ref|XP_001371191.1| PREDICTED: hypoth ( 314) 270 55.5 1.4e-05 gi|194184143|gb|EDW97754.1| GE10143 [Drosophila ya ( 732) 274 56.5 1.6e-05 gi|70905640|gb|AAZ14279.1| proteophosphoglycan ppg (1435) 274 56.8 2.6e-05 gi|134065504|emb|CAM43271.1| proteophosphoglycan p (5384) 277 57.9 4.5e-05 gi|63055532|gb|AAY29120.1| cement precursor protei ( 341) 260 53.8 4.7e-05 gi|134073236|emb|CAM71958.1| proteophosphoglycan p (5967) 275 57.6 6.1e-05 gi|60464974|gb|EAL63085.1| hypothetical protein DD ( 985) 261 54.5 8.8e-05 gi|109501561|ref|XP_001072007.1| PREDICTED: hypoth ( 526) 254 53.0 0.00013 gi|126337367|ref|XP_001372934.1| PREDICTED: hypoth ( 479) 252 52.7 0.00015 gi|70905643|gb|AAZ14282.1| proteophosphoglycan ppg (2425) 261 54.9 0.00016 gi|89287412|gb|EAR85403.1| HMG box family protein ( 633) 246 51.8 0.00036 gi|730030|sp|P40631.1|MLH_TETTH RecName: Full=Micr ( 633) 246 51.8 0.00036 gi|109509423|ref|XP_001077613.1| PREDICTED: hypoth ( 423) 243 51.1 0.00039 gi|70905641|gb|AAZ14280.1| proteophosphoglycan ppg (7194) 257 54.7 0.00055 gi|149821445|gb|EDM80845.1| adenylate kinase [Ples ( 660) 242 51.2 0.00059 gi|162077088|gb|ABX82448.1| dentin sialophosphopro ( 766) 242 51.2 0.00066 gi|162077114|gb|ABX82461.1| dentin sialophosphopro ( 769) 242 51.2 0.00066 gi|162077094|gb|ABX82451.1| dentin sialophosphopro ( 772) 242 51.2 0.00066 gi|162077116|gb|ABX82462.1| dentin sialophosphopro ( 778) 242 51.2 0.00067 gi|167860717|gb|ACA05133.1| dentin sialophosphopro ( 589) 239 50.6 0.00077 gi|162077110|gb|ABX82459.1| dentin sialophosphopro ( 768) 240 50.9 0.00083 gi|162077090|gb|ABX82449.1| dentin sialophosphopro ( 771) 240 50.9 0.00083 gi|162077096|gb|ABX82452.1| dentin sialophosphopro ( 772) 240 50.9 0.00083 gi|197935902|gb|ACH71689.1| dentin sialophosphopro ( 799) 240 50.9 0.00085 gi|221502098|gb|EEE27844.1| DNA mismatch repair pr (1314) 243 51.6 0.00085 gi|7228476|gb|AAF42472.1|AF163151_1 dentin sialoph (1253) 242 51.4 0.00093 gi|119626398|gb|EAX05993.1| dentin sialophosphopro (1259) 242 51.4 0.00093 gi|149269767|ref|XP_001478231.1| PREDICTED: hypoth ( 776) 238 50.6 0.0011 gi|144582366|gb|ABP00443.1| predicted protein [Ost ( 494) 235 49.9 0.0011 >>gi|148685303|gb|EDL17250.1| mCG67204 [Mus musculus] (1211 aa) initn: 1787 init1: 1787 opt: 1787 Z-score: 1609.2 bits: 307.7 E(): 6.3e-81 Smith-Waterman score: 1787; 100.000% identity (100.000% similar) in 284 aa overlap (1-284:928-1211) 10 20 30 mKIAA1 MKPARCRSKADSSRTSGRHSSSSSTQPKKE :::::::::::::::::::::::::::::: gi|148 NMRKGRPALASQESSLSSPSPSSPVPVKVSMKPARCRSKADSSRTSGRHSSSSSTQPKKE 900 910 920 930 940 950 40 50 60 70 80 90 mKIAA1 SSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSREG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSREG 960 970 980 990 1000 1010 100 110 120 130 140 150 mKIAA1 SRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGLK 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 mKIAA1 RDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGHQ 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 mKIAA1 PPGSQQPNTNAVGKEQLVSKDPAKHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSKKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PPGSQQPNTNAVGKEQLVSKDPAKHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSKKLS 1140 1150 1160 1170 1180 1190 280 mKIAA1 SSMQTSARPSQKPQ :::::::::::::: gi|148 SSMQTSARPSQKPQ 1200 1210 >>gi|82907597|ref|XP_357781.3| PREDICTED: ubiquitin spec (1344 aa) initn: 1787 init1: 1787 opt: 1787 Z-score: 1608.7 bits: 307.8 E(): 6.7e-81 Smith-Waterman score: 1787; 100.000% identity (100.000% similar) in 284 aa overlap (1-284:1061-1344) 10 20 30 mKIAA1 MKPARCRSKADSSRTSGRHSSSSSTQPKKE :::::::::::::::::::::::::::::: gi|829 NMRKGRPALASQESSLSSPSPSSPVPVKVSMKPARCRSKADSSRTSGRHSSSSSTQPKKE 1040 1050 1060 1070 1080 1090 40 50 60 70 80 90 mKIAA1 SSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSREG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|829 SSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSREG 1100 1110 1120 1130 1140 1150 100 110 120 130 140 150 mKIAA1 SRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|829 SRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGLK 1160 1170 1180 1190 1200 1210 160 170 180 190 200 210 mKIAA1 RDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|829 RDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGHQ 1220 1230 1240 1250 1260 1270 220 230 240 250 260 270 mKIAA1 PPGSQQPNTNAVGKEQLVSKDPAKHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSKKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|829 PPGSQQPNTNAVGKEQLVSKDPAKHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSKKLS 1280 1290 1300 1310 1320 1330 280 mKIAA1 SSMQTSARPSQKPQ :::::::::::::: gi|829 SSMQTSARPSQKPQ 1340 >>gi|149068029|gb|EDM17581.1| ubiquitin specific proteas (1089 aa) initn: 1420 init1: 1420 opt: 1710 Z-score: 1540.8 bits: 294.9 E(): 4.1e-77 Smith-Waterman score: 1710; 95.105% identity (98.951% similar) in 286 aa overlap (1-284:804-1089) 10 20 30 mKIAA1 MKPARCRSKADSSRTSGRHSSSSSTQPKKE ::::::::::::::::::::::.::::::: gi|149 SMRKGRPALASQESSLSSPSPSSPVPVKVSMKPARCRSKADSSRTSGRHSSSASTQPKKE 780 790 800 810 820 830 40 50 60 70 80 90 mKIAA1 SSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSREG ::::::::::::::::::::::::::::::::: ::.:.::::.::::::::::::::.: gi|149 SSPRSQESMSSPSPQKQKSASAFTYSSSSISAKTAPGPATRGPLPSGKSRTSDRSLSRQG 840 850 860 870 880 890 100 110 120 130 140 150 mKIAA1 SRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGLK ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|149 SRQSLGSDRASVTSTSTSKPSSPRVNQARAGDSRVDGKHVRSSSMASLRSPSTSVRSGLK 900 910 920 930 940 950 160 170 180 190 200 210 mKIAA1 RDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGHQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|149 RDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKAEKGHQ 960 970 980 990 1000 1010 220 230 240 250 260 mKIAA1 PPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSKK ::::::::::..::::::::::: ::::::::::::::.:::::::::::::::::::: gi|149 PPGSQQPNTNTTGKEQLVSKDPASAKHSLLSARRSKSSQVDSGAPLSPSSRSTTEKGSKK 1020 1030 1040 1050 1060 1070 270 280 mKIAA1 LSSSMQTSARPSQKPQ ::::::::::::.::: gi|149 LSSSMQTSARPSHKPQ 1080 >>gi|193787404|dbj|BAG52610.1| unnamed protein product [ (645 aa) initn: 724 init1: 724 opt: 1457 Z-score: 1316.8 bits: 252.7 E(): 1.2e-64 Smith-Waterman score: 1457; 80.836% identity (94.425% similar) in 287 aa overlap (1-284:361-645) 10 20 mKIAA1 MKPARCRSKADSS-RTSGRHSSSSSTQPKK .::.: ::::::: : :::::: . .:::: gi|193 SLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKK 340 350 360 370 380 390 30 40 50 60 70 80 mKIAA1 ESSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSRE ::::.::.:.:::::::::::::.::..:: ::::: .:.::.::: :::::::.::::: gi|193 ESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPPGKSRTSDHSLSRE 400 410 420 430 440 450 90 100 110 120 130 140 mKIAA1 GSRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGL :::::::::::: .::::::.::::.:::::..: ::::::::::::::::::..::: gi|193 GSRQSLGSDRAS--ATSTSKPNSPRVSQARAGEGRGAGKHVRSSSMASLRSPSTSIKSGL 460 470 480 490 500 150 160 170 180 190 200 mKIAA1 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGH ::::::::::::::::::::::::::::::::.:::::::::::::: :::.::..:.:: gi|193 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTALLSKKAGGSSVKSVCKNTGDDEAERGH 510 520 530 540 550 560 210 220 230 240 250 260 mKIAA1 QPPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSK :::.:::::.:..::::::.:::: ::::::::.:::::::::.: ::..:...::.:: gi|193 QPPASQQPNANTTGKEQLVTKDPASAKHSLLSARKSKSSQLDSGVPSSPGGRQSAEKSSK 570 580 590 600 610 620 270 280 mKIAA1 KLSSSMQTSARPSQKPQ ::::::::::::::::: gi|193 KLSSSMQTSARPSQKPQ 630 640 >>gi|119576240|gb|EAW55836.1| ubiquitin specific peptida (909 aa) initn: 724 init1: 724 opt: 1457 Z-score: 1314.9 bits: 252.9 E(): 1.6e-64 Smith-Waterman score: 1457; 80.836% identity (94.425% similar) in 287 aa overlap (1-284:625-909) 10 20 mKIAA1 MKPARCRSKADSS-RTSGRHSSSSSTQPKK .::.: ::::::: : :::::: . .:::: gi|119 SLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKK 600 610 620 630 640 650 30 40 50 60 70 80 mKIAA1 ESSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSRE ::::.::.:.:::::::::::::.::..:: ::::: .:.::.::: :::::::.::::: gi|119 ESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPPGKSRTSDHSLSRE 660 670 680 690 700 710 90 100 110 120 130 140 mKIAA1 GSRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGL :::::::::::: .::::::.::::.:::::..: ::::::::::::::::::..::: gi|119 GSRQSLGSDRAS--ATSTSKPNSPRVSQARAGEGRGAGKHVRSSSMASLRSPSTSIKSGL 720 730 740 750 760 770 150 160 170 180 190 200 mKIAA1 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGH ::::::::::::::::::::::::::::::::.:::::::::::::: :::.::..:.:: gi|119 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTALLSKKAGGSSVKSVCKNTGDDEAERGH 780 790 800 810 820 830 210 220 230 240 250 260 mKIAA1 QPPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSK :::.:::::.:..::::::.:::: ::::::::.:::::::::.: ::..:...::.:: gi|119 QPPASQQPNANTTGKEQLVTKDPASAKHSLLSARKSKSSQLDSGVPSSPGGRQSAEKSSK 840 850 860 870 880 890 270 280 mKIAA1 KLSSSMQTSARPSQKPQ ::::::::::::::::: gi|119 KLSSSMQTSARPSQKPQ 900 >>gi|109127891|ref|XP_001087999.1| PREDICTED: similar to (1293 aa) initn: 771 init1: 771 opt: 1459 Z-score: 1314.8 bits: 253.3 E(): 1.6e-64 Smith-Waterman score: 1459; 81.315% identity (93.772% similar) in 289 aa overlap (1-284:1007-1293) 10 20 mKIAA1 MKPARCRSKADSS-RTSGRHSSSSST--QP .::.: ::::::: : :::::: . . :: gi|109 SLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAPAQP 980 990 1000 1010 1020 1030 30 40 50 60 70 80 mKIAA1 KKESSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLS .:::::.::.:.:::::::::::::.::..::.::::: .:.::.::: ::::::::::: gi|109 RKESSPKSQDSVSSPSPQKQKSASALTYTASSMSAKKASGPATRSPFPPGKSRTSDRSLS 1040 1050 1060 1070 1080 1090 90 100 110 120 130 140 mKIAA1 REGSRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRS :::::::::::::: .::.:::.::::.:::::..: ::::::::::::::::.:..: gi|109 REGSRQSLGSDRAS--ATSASKPNSPRVSQARAGEGRGAGKHVRSSSMASLRSPSASIKS 1100 1110 1120 1130 1140 1150 150 160 170 180 190 200 mKIAA1 GLKRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEK ::::::::::::::::::::::::::::::::::.:::::::::::::: :::.::: :: gi|109 GLKRDSKSEDKGLSFFKSALRQKETRRSTDLGKTALLSKKAGGSSVKSVCKNTGDDKGEK 1160 1170 1180 1190 1200 1210 210 220 230 240 250 260 mKIAA1 GHQPPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKG :::::.:::::.::.::::::::::: ::::::::.:::::::::.: ::.::...::. gi|109 GHQPPASQQPNANATGKEQLVSKDPASAKHSLLSARKSKSSQLDSGVPSSPGSRQSAEKS 1220 1230 1240 1250 1260 1270 270 280 mKIAA1 SKKLSSSMQTSARPSQKPQ ::::::::::::::::::: gi|109 SKKLSSSMQTSARPSQKPQ 1280 1290 >>gi|119576239|gb|EAW55835.1| ubiquitin specific peptida (1100 aa) initn: 724 init1: 724 opt: 1457 Z-score: 1313.9 bits: 252.9 E(): 1.8e-64 Smith-Waterman score: 1457; 80.836% identity (94.425% similar) in 287 aa overlap (1-284:816-1100) 10 20 mKIAA1 MKPARCRSKADSS-RTSGRHSSSSSTQPKK .::.: ::::::: : :::::: . .:::: gi|119 SLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKK 790 800 810 820 830 840 30 40 50 60 70 80 mKIAA1 ESSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSRE ::::.::.:.:::::::::::::.::..:: ::::: .:.::.::: :::::::.::::: gi|119 ESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPPGKSRTSDHSLSRE 850 860 870 880 890 900 90 100 110 120 130 140 mKIAA1 GSRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGL :::::::::::: .::::::.::::.:::::..: ::::::::::::::::::..::: gi|119 GSRQSLGSDRAS--ATSTSKPNSPRVSQARAGEGRGAGKHVRSSSMASLRSPSTSIKSGL 910 920 930 940 950 960 150 160 170 180 190 200 mKIAA1 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGH ::::::::::::::::::::::::::::::::.:::::::::::::: :::.::..:.:: gi|119 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTALLSKKAGGSSVKSVCKNTGDDEAERGH 970 980 990 1000 1010 1020 210 220 230 240 250 260 mKIAA1 QPPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSK :::.:::::.:..::::::.:::: ::::::::.:::::::::.: ::..:...::.:: gi|119 QPPASQQPNANTTGKEQLVTKDPASAKHSLLSARKSKSSQLDSGVPSSPGGRQSAEKSSK 1030 1040 1050 1060 1070 1080 270 280 mKIAA1 KLSSSMQTSARPSQKPQ ::::::::::::::::: gi|119 KLSSSMQTSARPSQKPQ 1090 1100 >>gi|134047944|sp|Q70CQ4.2|UBP31_HUMAN RecName: Full=Ubi (1352 aa) initn: 724 init1: 724 opt: 1457 Z-score: 1312.8 bits: 253.0 E(): 2e-64 Smith-Waterman score: 1457; 80.836% identity (94.425% similar) in 287 aa overlap (1-284:1068-1352) 10 20 mKIAA1 MKPARCRSKADSS-RTSGRHSSSSSTQPKK .::.: ::::::: : :::::: . .:::: gi|134 SLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKK 1040 1050 1060 1070 1080 1090 30 40 50 60 70 80 mKIAA1 ESSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSRE ::::.::.:.:::::::::::::.::..:: ::::: .:.::.::: :::::::.::::: gi|134 ESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPPGKSRTSDHSLSRE 1100 1110 1120 1130 1140 1150 90 100 110 120 130 140 mKIAA1 GSRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGL :::::::::::: .::::::.::::.:::::..: ::::::::::::::::::..::: gi|134 GSRQSLGSDRAS--ATSTSKPNSPRVSQARAGEGRGAGKHVRSSSMASLRSPSTSIKSGL 1160 1170 1180 1190 1200 1210 150 160 170 180 190 200 mKIAA1 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGH ::::::::::::::::::::::::::::::::.:::::::::::::: :::.::..:.:: gi|134 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTALLSKKAGGSSVKSVCKNTGDDEAERGH 1220 1230 1240 1250 1260 1270 210 220 230 240 250 260 mKIAA1 QPPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSK :::.:::::.:..::::::.:::: ::::::::.:::::::::.: ::..:...::.:: gi|134 QPPASQQPNANTTGKEQLVTKDPASAKHSLLSARKSKSSQLDSGVPSSPGGRQSAEKSSK 1280 1290 1300 1310 1320 1330 270 280 mKIAA1 KLSSSMQTSARPSQKPQ ::::::::::::::::: gi|134 KLSSSMQTSARPSQKPQ 1340 1350 >>gi|40788185|emb|CAE51935.2| ubiquitin-specific protein (1352 aa) initn: 724 init1: 724 opt: 1457 Z-score: 1312.8 bits: 253.0 E(): 2e-64 Smith-Waterman score: 1457; 80.836% identity (94.425% similar) in 287 aa overlap (1-284:1068-1352) 10 20 mKIAA1 MKPARCRSKADSS-RTSGRHSSSSSTQPKK .::.: ::::::: : :::::: . .:::: gi|407 SLRKGRPALASQESSLSSTSPSSPLPVKVSLKPSRSRSKADSSSRGSGRHSSPAPAQPKK 1040 1050 1060 1070 1080 1090 30 40 50 60 70 80 mKIAA1 ESSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSRE ::::.::.:.:::::::::::::.::..:: ::::: .:.::.::: :::::::.::::: gi|407 ESSPKSQDSVSSPSPQKQKSASALTYTASSTSAKKASGPATRSPFPPGKSRTSDHSLSRE 1100 1110 1120 1130 1140 1150 90 100 110 120 130 140 mKIAA1 GSRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGL :::::::::::: .::::::.::::.:::::..: ::::::::::::::::::..::: gi|407 GSRQSLGSDRAS--ATSTSKPNSPRVSQARAGEGRGAGKHVRSSSMASLRSPSTSIKSGL 1160 1170 1180 1190 1200 1210 150 160 170 180 190 200 mKIAA1 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGH ::::::::::::::::::::::::::::::::.:::::::::::::: :::.::..:.:: gi|407 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTALLSKKAGGSSVKSVCKNTGDDEAERGH 1220 1230 1240 1250 1260 1270 210 220 230 240 250 260 mKIAA1 QPPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSK :::.:::::.:..::::::.:::: ::::::::.:::::::::.: ::..:...::.:: gi|407 QPPASQQPNANTTGKEQLVTKDPASAKHSLLSARKSKSSQLDSGVPSSPGGRQSAEKSSK 1280 1290 1300 1310 1320 1330 270 280 mKIAA1 KLSSSMQTSARPSQKPQ ::::::::::::::::: gi|407 KLSSSMQTSARPSQKPQ 1340 1350 >>gi|194219144|ref|XP_001498764.2| PREDICTED: ubiquitin (1317 aa) initn: 690 init1: 690 opt: 1404 Z-score: 1265.4 bits: 244.2 E(): 8.9e-62 Smith-Waterman score: 1404; 78.397% identity (92.334% similar) in 287 aa overlap (1-284:1033-1317) 10 20 mKIAA1 MKPARCRSKADSS-RTSGRHSSSSSTQPKK .::.: ::::::: :.:::::: .:::: gi|194 GVRKGRPVLASQESSLSSTSPSSPVPVKVSVKPSRSRSKADSSSRASGRHSSPVPAQPKK 1010 1020 1030 1040 1050 1060 30 40 50 60 70 80 mKIAA1 ESSPRSQESMSSPSPQKQKSASAFTYSSSSISAKKAPSPVTRGPFPSGKSRTSDRSLSRE ::::. :.: ::::::::::: :.: . :: ::::: .:..::::: ::.:::::::::: gi|194 ESSPKCQDSASSPSPQKQKSAPALTCTVSSTSAKKASGPASRGPFPPGKGRTSDRSLSRE 1070 1080 1090 1100 1110 1120 90 100 110 120 130 140 mKIAA1 GSRQSLGSDRASVTSTSTSKPSSPRVNQARAGDNRVDGKHVRSSSMASLRSPSTSVRSGL ::::::.:::::..:.: ::.::::.:::.:..: ::::::::::::::::.::...:: gi|194 GSRQSLASDRASIASSS--KPNSPRVSQARVGEGRGDGKHVRSSSMASLRSPNTSMKAGL 1130 1140 1150 1160 1170 1180 150 160 170 180 190 200 mKIAA1 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKAGGSSVKSVSKNTADDKTEKGH :::::::::::::::::::::::::::::::::::::::.::::::. ::. :::.:::. gi|194 KRDSKSEDKGLSFFKSALRQKETRRSTDLGKTTLLSKKASGSSVKSACKNAMDDKAEKGY 1190 1200 1210 1220 1230 1240 210 220 230 240 250 260 mKIAA1 QPPGSQQPNTNAVGKEQLVSKDPA--KHSLLSARRSKSSQLDSGAPLSPSSRSTTEKGSK : ::::::..:::::::::::::: ::::::::.:::::::::.: ::..:...::.:: gi|194 QAPGSQQPSANAVGKEQLVSKDPASAKHSLLSARKSKSSQLDSGVPSSPGGRQSAEKSSK 1250 1260 1270 1280 1290 1300 270 280 mKIAA1 KLSSSMQTSARPSQKPQ ::::::::::::::::: gi|194 KLSSSMQTSARPSQKPQ 1310 284 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 04:40:28 2009 done: Fri Mar 13 04:45:59 2009 Total Scan time: 770.450 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]