FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0298.ptfa, 208 aa vs ./tmplib.26680 library 1768809 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.1915+/-0.0042; mu= 9.6302+/- 0.281 mean_var=80.8749+/-18.343, 0's: 0 Z-trim: 7 B-trim: 2 in 1/35 Lambda= 0.1426 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1113 ( 1071 res) mpm06042 (1071) 563 125 1.1e-29 mKIAA0314 ( 886 res) mbg04168 ( 886) 251 61 2.1e-10 mKIAA4005 ( 818 res) mfj27181 ( 818) 236 58 1.7e-09 mKIAA1740 ( 978 res) mpm09324 ( 978) 170 44 2.3e-05 mKIAA1125 ( 1253 res) mbg01394 (1253) 144 39 0.0011 mKIAA1286 ( 649 res) mpm06087 ( 649) 135 37 0.0025 >>mKIAA1113 ( 1071 res) mpm06042 (1071 aa) initn: 521 init1: 424 opt: 563 Z-score: 625.1 bits: 125.0 E(): 1.1e-29 Smith-Waterman score: 571; 45.161% identity (48.276% ungapped) in 186 aa overlap (1-186:887-1060) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :.::.::.. .::.::::.: .... : .. mKIAA1 GGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKG-KT 860 870 880 890 900 910 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD ::: ::.:::.:.: : :. ::. :.::: .::.:::.::::: ...::::: mKIAA1 AQGLSPVDQRKCERLLLYLYCHELSIEFQEPVPVSIPNYYKIIKKPMDLSTVKKKLQKKH 920 930 940 950 960 970 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :: :.. :.::::.: :: .:: :::::.::. . ..:: :.::: :. :. . mKIAA1 SQHYQIPDDFVADVRLIFKNCERFNEGDSEVAKAGKAVALYFEDKLSEIYSDRTFTPLPE 980 990 1000 1010 1020 1030 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV ..: .: :: .. . : :::.:.: mKIAA1 FEQDEDD--GEVTEDSDEDF---------IQPRRKRLKSDERPVHIK 1040 1050 1060 1070 >>mKIAA0314 ( 886 res) mbg04168 (886 aa) initn: 224 init1: 129 opt: 251 Z-score: 279.2 bits: 60.7 E(): 2.1e-10 Smith-Waterman score: 251; 39.252% identity (40.777% ungapped) in 107 aa overlap (38-143:779-882) 10 20 30 40 50 60 mKIAA0 SLTQPEMEYDCENARYGHPGVRVLPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSP-LA : :: ... . .. . :: :::.: :. mKIAA0 SRDSPAVPRYPEDGLSPPKRRRHSMRSHHSDLTFCEIILMEMESHDAAWPFLEPVNPRLV 750 760 770 780 790 800 70 80 90 100 110 120 mKIAA0 RHYYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGR : ..:: :::.: .:..: . . ::. :: ..:. :.: :: :: ::::..::. mKIAA0 SGYRRVIKNPMDFSTMRERLLR---GGYTSSEEFAADALLVFDNCQTFNEDDSEVGKAGH 810 820 830 840 850 860 130 140 150 160 170 180 mKIAA0 CLEVFFEGWLKEIYPDKCFAQPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRR .. :::. .:.: : mKIAA0 VMRRFFESRWEEFYQGKQANL 870 880 >>mKIAA4005 ( 818 res) mfj27181 (818 aa) initn: 141 init1: 126 opt: 236 Z-score: 263.0 bits: 57.6 E(): 1.7e-09 Smith-Waterman score: 236; 40.909% identity (45.000% ungapped) in 110 aa overlap (40-143:370-475) 10 20 30 40 50 60 mKIAA0 TQPEMEYDCENARYGHPGVRVLPGLSMYDQKKCE---KLVLSLCCNSLSLPFHEPV--SP :.:. : .:: . . ::..:: : mKIAA4 GRPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASA 340 350 360 370 380 390 70 80 90 100 110 120 mKIAA0 LARH-YYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAE :. : :..:::.::::: ..::....: : .: ..:::::: :: :.: :: .:. mKIAA4 LGLHDYHDIIKHPMDLSTVKRKMENRD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVA 400 410 420 430 440 450 130 140 150 160 170 180 mKIAA0 AGRCLEVFFEGWLKEIYPDKCFAQPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPK .: :. :: .. ::. mKIAA4 MARKLQDVFEFRYAKM-PDEPLEPGPLPVSTALPPGLTKSSSESSSEESSSESSSEEEEE 460 470 480 490 500 510 >>mKIAA1740 ( 978 res) mpm09324 (978 aa) initn: 200 init1: 94 opt: 170 Z-score: 188.6 bits: 44.1 E(): 2.3e-05 Smith-Waterman score: 170; 34.286% identity (36.735% ungapped) in 105 aa overlap (66-166:1-102) 40 50 60 70 80 90 mKIAA0 MYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKDPAHYT : .:::::: :::.: ...:: . . : mKIAA1 APNYYQIIKIPMDISSMEKKL---NGGLYC 10 20 100 110 120 130 140 150 mKIAA0 TPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ----E . :: :.:.. :: :: :.: .:: .. . :: :. . . .: . .. : mKIAA1 NKEEFVNDMKTMFRNCRKYNGDSSEYTKMSDNLERCFHRAMTKHFPGEDGDTDEEFWIKE 30 40 50 60 70 80 160 170 180 190 200 mKIAA0 DSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV : : ..:: :. mKIAA1 DEKREKRRSRSGRSSGSHVWTRSRDTEGSSRKQPPVENGGKSLPPARRAASSGDDQSRSS 90 100 110 120 130 140 >>mKIAA1125 ( 1253 res) mbg01394 (1253 aa) initn: 98 init1: 53 opt: 144 Z-score: 158.2 bits: 38.9 E(): 0.0011 Smith-Waterman score: 144; 21.000% identity (23.596% ungapped) in 200 aa overlap (1-196:147-328) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV : : :...: : : ... .. mKIAA1 HREGQVLCCELCPRVYHAKCLRLTSEPEGDWFCPECEKITVAE----CIETQS-----KA 120 130 140 150 160 40 50 60 70 80 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARH--YYQIIKRPMDLSIIRRKLQK . :.. . . :.... . . :..:: :: .: : . : .:::: .... .: mKIAA1 MTMLTIEQLSYLLKFAIQKMKQPGTDAFQKPV-PLEQHPDYAEYIFHPMDLCTLEKNAKK 170 180 190 200 210 220 90 100 110 120 130 140 mKIAA0 KDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIY--PDKCFA : : : ..:.. .. :: .: . .... .. . . : ..:: :. .: mKIAA1 K---MYGCTEAFLADAKWILHNCIIYNGGNHKLTQIAKVVIKICEHEMNEIEVCPECYLA 230 240 250 260 270 280 150 160 170 180 190 200 mKIAA0 QPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSIS :..:. . ::.:. . : . : . : ... : mKIAA1 ACQKRDNWFCE-----PCSNPHPLVWAKLKGFPFWPAKALRDKDGQVDARFFGQHDRAWV 290 300 310 320 330 mKIAA0 QV mKIAA1 PVNNCYLMSKEIPFSVKKTKSIFNSAMQEMEVYVENIRRKFGVFNYSPFRTPYTPNNQYQ 340 350 360 370 380 390 >>mKIAA1286 ( 649 res) mpm06087 (649 aa) initn: 170 init1: 76 opt: 135 Z-score: 152.0 bits: 36.8 E(): 0.0025 Smith-Waterman score: 135; 42.188% identity (46.552% ungapped) in 64 aa overlap (58-119:118-177) 30 40 50 60 70 80 mKIAA0 VRVLPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVS-PLARHYYQIIKRPMDLSIIRRKL : :::: . : ..:..:::.: .:::: mKIAA1 QAAMELELMPFTVLLRTTLDLLQEKDSAHIFAEPVSLSEVPDYLEFISKPMDFSTMRRKL 90 100 110 120 130 140 90 100 110 120 130 140 mKIAA0 QKKDPAH-YTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCF . .: : : :: : :. :: :.: :. mKIAA1 E----SHLYHTLEEFEEDFNLIVTNCMKYNAKDTIFHRAAVRLRDLGGAILRHARRQAEN 150 160 170 180 190 200 150 160 170 180 190 200 mKIAA0 AQPQQEDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSI mKIAA1 IGYDPERGTHLPESPRLEDFYRFSWEDVDNILIPENRAHLSPEAQLKELLEKLDLVSTMR 210 220 230 240 250 260 208 residues in 1 query sequences 1768809 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:16:55 2006 done: Mon Mar 27 10:16:55 2006 Scan time: 0.410 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]