# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg08362.fasta.nr -Q ../query/mKIAA0298.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0298, 208 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918638 sequences Expectation_n fit: rho(ln(x))= 4.7623+/-0.000182; mu= 10.2328+/- 0.010 mean_var=64.5549+/-12.649, 0's: 35 Z-trim: 53 B-trim: 3461 in 2/65 Lambda= 0.159628 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|187950891|gb|AAI38033.1| Tripartite motif-conta (1242) 1485 350.6 5.8e-94 gi|152031713|sp|Q924W6.2|TRI66_MOUSE RecName: Full (1242) 1485 350.6 5.8e-94 gi|79750343|ref|NP_862901.2| tripartite motif-cont (1242) 1485 350.6 5.8e-94 gi|45861756|gb|AAS78676.1| transcriptional interme (1344) 1485 350.7 6.1e-94 gi|149068363|gb|EDM17915.1| rCG40452, isoform CRA_ (1210) 1467 346.5 1e-92 gi|109459214|ref|XP_341902.3| PREDICTED: similar t (1243) 1467 346.5 1e-92 gi|119589026|gb|EAW68620.1| hCG23889, isoform CRA_ (1214) 1381 326.7 9.2e-87 gi|209977097|ref|NP_055633.1| tripartite motif-con (1216) 1381 326.7 9.2e-87 gi|74184798|dbj|BAE27995.1| unnamed protein produc (1233) 1373 324.8 3.3e-86 gi|73988816|ref|XP_542497.2| PREDICTED: similar to (1323) 1358 321.4 3.9e-85 gi|149720016|ref|XP_001500723.1| PREDICTED: simila (1365) 1343 318.0 4.3e-84 gi|109107416|ref|XP_001097566.1| PREDICTED: tripar (1433) 1286 304.9 4e-80 gi|119935759|ref|XP_001257062.1| PREDICTED: simila ( 609) 1262 299.0 9.7e-79 gi|126332443|ref|XP_001379177.1| PREDICTED: simila (1336) 1220 289.6 1.4e-75 gi|194673665|ref|XP_599031.4| PREDICTED: similar t (1353) 948 227.0 1e-56 gi|189521329|ref|XP_001920882.1| PREDICTED: simila (1119) 701 170.0 1.2e-39 gi|55962792|emb|CAI11773.1| novel protein [Danio r ( 416) 692 167.6 2.4e-39 gi|224084770|ref|XP_002194420.1| PREDICTED: simila ( 895) 589 144.2 5.9e-32 gi|67971672|dbj|BAE02178.1| unnamed protein produc ( 592) 568 139.2 1.2e-30 gi|109467308|ref|XP_001064293.1| PREDICTED: simila (1031) 568 139.4 1.9e-30 gi|119889585|ref|XP_001250500.1| PREDICTED: simila (1109) 568 139.4 2e-30 gi|12407443|gb|AAG53510.1|AF220137_1 tripartite mo (1110) 568 139.4 2e-30 gi|55959586|emb|CAI13551.1| tripartite motif-conta (1110) 568 139.4 2e-30 gi|109467306|ref|XP_001064397.1| PREDICTED: simila (1127) 568 139.4 2e-30 gi|47220585|emb|CAG05611.1| unnamed protein produc ( 185) 558 136.5 2.5e-30 gi|119637830|ref|NP_001073299.1| tripartite motif (1123) 563 138.3 4.4e-30 gi|126340851|ref|XP_001374515.1| PREDICTED: simila (1061) 531 130.9 7e-28 gi|118082899|ref|XP_416340.2| PREDICTED: similar t ( 983) 529 130.4 9.1e-28 gi|149632192|ref|XP_001508010.1| PREDICTED: simila ( 852) 523 129.0 2.1e-27 gi|183985692|gb|AAI66206.1| LOC100158542 protein [ (1040) 521 128.6 3.4e-27 gi|224096253|ref|XP_002191494.1| PREDICTED: tripar (1061) 517 127.6 6.6e-27 gi|194380288|dbj|BAG63911.1| unnamed protein produ ( 961) 512 126.5 1.3e-26 gi|4325107|gb|AAD17258.1| transcriptional intermed (1016) 512 126.5 1.4e-26 gi|114616230|ref|XP_001149109.1| PREDICTED: transc (1036) 512 126.5 1.4e-26 gi|109068376|ref|XP_001107279.1| PREDICTED: transc (1050) 512 126.5 1.4e-26 gi|12746552|sp|O15164.3|TIF1A_HUMAN RecName: Full= (1050) 512 126.5 1.4e-26 gi|2267585|gb|AAB63585.1| transcription intermedia (1012) 510 126.0 1.9e-26 gi|149747791|ref|XP_001497035.1| PREDICTED: simila ( 942) 506 125.1 3.5e-26 gi|81294213|gb|AAI07916.1| Trim24 protein [Rattus ( 607) 501 123.8 5.5e-26 gi|194666455|ref|XP_617403.4| PREDICTED: similar t ( 935) 502 124.2 6.5e-26 gi|149065270|gb|EDM15346.1| rCG27932, isoform CRA_ (1016) 501 123.9 8.2e-26 gi|149065269|gb|EDM15345.1| rCG27932, isoform CRA_ (1050) 501 124.0 8.4e-26 gi|19343832|gb|AAH25482.1| Trim24 protein [Mus mus ( 516) 493 121.9 1.7e-25 gi|74151452|dbj|BAE38840.1| unnamed protein produc ( 764) 493 122.0 2.4e-25 gi|74221665|dbj|BAE21530.1| unnamed protein produc ( 981) 493 122.1 2.8e-25 gi|998813|gb|AAB34289.1| TIF1 [Mus sp.] gi|148 (1017) 493 122.1 2.9e-25 gi|6175058|sp|Q64127.1|TIF1A_MOUSE RecName: Full=T (1051) 493 122.1 3e-25 gi|118102487|ref|XP_418009.2| PREDICTED: similar t ( 972) 466 115.9 2.1e-23 gi|213625298|gb|AAI70291.1| Ectodermin [Xenopus la (1091) 464 115.5 3.2e-23 gi|82122015|sp|Q56R14.1|TRI33_XENLA RecName: Full= (1091) 464 115.5 3.2e-23 >>gi|187950891|gb|AAI38033.1| Tripartite motif-containin (1242 aa) initn: 1485 init1: 1485 opt: 1485 Z-score: 1843.3 bits: 350.6 E(): 5.8e-94 Smith-Waterman score: 1485; 100.000% identity (100.000% similar) in 208 aa overlap (1-208:1035-1242) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :::::::::::::::::::::::::::::: gi|187 GGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYGHPGVRV 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1070 1080 1090 1100 1110 1120 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 1130 1140 1150 1160 1170 1180 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV 1190 1200 1210 1220 1230 1240 >>gi|152031713|sp|Q924W6.2|TRI66_MOUSE RecName: Full=Tri (1242 aa) initn: 1485 init1: 1485 opt: 1485 Z-score: 1843.3 bits: 350.6 E(): 5.8e-94 Smith-Waterman score: 1485; 100.000% identity (100.000% similar) in 208 aa overlap (1-208:1035-1242) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :::::::::::::::::::::::::::::: gi|152 GGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYGHPGVRV 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1070 1080 1090 1100 1110 1120 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 1130 1140 1150 1160 1170 1180 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV 1190 1200 1210 1220 1230 1240 >>gi|79750343|ref|NP_862901.2| tripartite motif-containi (1242 aa) initn: 1485 init1: 1485 opt: 1485 Z-score: 1843.3 bits: 350.6 E(): 5.8e-94 Smith-Waterman score: 1485; 100.000% identity (100.000% similar) in 208 aa overlap (1-208:1035-1242) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :::::::::::::::::::::::::::::: gi|797 GGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYGHPGVRV 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|797 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1070 1080 1090 1100 1110 1120 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|797 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 1130 1140 1150 1160 1170 1180 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|797 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV 1190 1200 1210 1220 1230 1240 >>gi|45861756|gb|AAS78676.1| transcriptional intermediar (1344 aa) initn: 1485 init1: 1485 opt: 1485 Z-score: 1842.8 bits: 350.7 E(): 6.1e-94 Smith-Waterman score: 1485; 100.000% identity (100.000% similar) in 208 aa overlap (1-208:1137-1344) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :::::::::::::::::::::::::::::: gi|458 GGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYGHPGVRV 1110 1120 1130 1140 1150 1160 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1170 1180 1190 1200 1210 1220 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 1230 1240 1250 1260 1270 1280 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV 1290 1300 1310 1320 1330 1340 >>gi|149068363|gb|EDM17915.1| rCG40452, isoform CRA_b [R (1210 aa) initn: 1467 init1: 1467 opt: 1467 Z-score: 1821.0 bits: 346.5 E(): 1e-92 Smith-Waterman score: 1467; 98.558% identity (100.000% similar) in 208 aa overlap (1-208:1003-1210) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :::::::::::::::::::::::.:::::. gi|149 GGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYSHPGVRA 980 990 1000 1010 1020 1030 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1040 1050 1060 1070 1080 1090 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 1100 1110 1120 1130 1140 1150 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|149 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLTNSISQV 1160 1170 1180 1190 1200 1210 >>gi|109459214|ref|XP_341902.3| PREDICTED: similar to tr (1243 aa) initn: 1467 init1: 1467 opt: 1467 Z-score: 1820.9 bits: 346.5 E(): 1e-92 Smith-Waterman score: 1467; 98.558% identity (100.000% similar) in 208 aa overlap (1-208:1036-1243) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :::::::::::::::::::::::.:::::. gi|109 GGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYSHPGVRA 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1070 1080 1090 1100 1110 1120 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 1130 1140 1150 1160 1170 1180 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|109 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLTNSISQV 1190 1200 1210 1220 1230 1240 >>gi|119589026|gb|EAW68620.1| hCG23889, isoform CRA_a [H (1214 aa) initn: 1381 init1: 1381 opt: 1381 Z-score: 1714.0 bits: 326.7 E(): 9.2e-87 Smith-Waterman score: 1381; 92.788% identity (98.558% similar) in 208 aa overlap (1-208:1007-1214) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV ::::::::::::::::::::: :..::.:. gi|119 GGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENACYNQPGMRA 980 990 1000 1010 1020 1030 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|119 SPGLSMYDQKKCEKLVLSLCCNNLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1040 1050 1060 1070 1080 1090 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::.: ::::.: gi|119 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPEKRFAQPRQ 1100 1110 1120 1130 1140 1150 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV ::::::.::.::::::::::::::::::::::::::::::::..::.::::::::::: gi|119 EDSDSEEVSSESGCSTPQGFPWPPYMQEGIQPKRRRRHMENERAKRMSFRLANSISQV 1160 1170 1180 1190 1200 1210 >>gi|209977097|ref|NP_055633.1| tripartite motif-contain (1216 aa) initn: 1381 init1: 1381 opt: 1381 Z-score: 1714.0 bits: 326.7 E(): 9.2e-87 Smith-Waterman score: 1381; 92.788% identity (98.558% similar) in 208 aa overlap (1-208:1009-1216) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV ::::::::::::::::::::: :..::.:. gi|209 GGELLCCDRCPKVFHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENACYNQPGMRA 980 990 1000 1010 1020 1030 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|209 SPGLSMYDQKKCEKLVLSLCCNNLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1040 1050 1060 1070 1080 1090 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::.: ::::.: gi|209 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPEKRFAQPRQ 1100 1110 1120 1130 1140 1150 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV ::::::.::.::::::::::::::::::::::::::::::::..::.::::::::::: gi|209 EDSDSEEVSSESGCSTPQGFPWPPYMQEGIQPKRRRRHMENERAKRMSFRLANSISQV 1160 1170 1180 1190 1200 1210 >>gi|74184798|dbj|BAE27995.1| unnamed protein product [M (1233 aa) initn: 1373 init1: 1373 opt: 1373 Z-score: 1703.9 bits: 324.8 E(): 3.3e-86 Smith-Waterman score: 1373; 100.000% identity (100.000% similar) in 189 aa overlap (1-189:1035-1223) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV :::::::::::::::::::::::::::::: gi|741 GGELLCCDRCPKVYHLSCHVPALLSFPGGEWVCTLCRSLTQPEMEYDCENARYGHPGVRV 1010 1020 1030 1040 1050 1060 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1070 1080 1090 1100 1110 1120 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ 1130 1140 1150 1160 1170 1180 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV ::::::::::::::::::::::::::::::::::::::: gi|741 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMVKSFCQPVGE 1190 1200 1210 1220 1230 >>gi|73988816|ref|XP_542497.2| PREDICTED: similar to tra (1323 aa) initn: 1358 init1: 1358 opt: 1358 Z-score: 1684.8 bits: 321.4 E(): 3.9e-85 Smith-Waterman score: 1358; 91.346% identity (97.596% similar) in 208 aa overlap (1-208:1116-1323) 10 20 30 mKIAA0 WVCTLCRSLTQPEMEYDCENARYGHPGVRV ::::::::::::::::::::::: .::.: gi|739 GGELLCCDRCPKVFHLSCHLPALLGFPGGDWVCTLCRSLTQPEMEYDCENARYYQPGMRD 1090 1100 1110 1120 1130 1140 40 50 60 70 80 90 mKIAA0 LPGLSMYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TPGLSIYDQKKCEKLVLSLCCNSLSLPFHEPVSPLARHYYQIIKRPMDLSIIRRKLQKKD 1150 1160 1170 1180 1190 1200 100 110 120 130 140 150 mKIAA0 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPDKCFAQPQQ :::::::::::::::::::::::::::::::::::::::::::::::::::.: ::::.: gi|739 PAHYTTPEEVVSDVRLMFWNCAKFNYPDSEVAEAGRCLEVFFEGWLKEIYPEKQFAQPRQ 1210 1220 1230 1240 1250 1260 160 170 180 190 200 mKIAA0 EDSDSEDVSGESGCSTPQGFPWPPYMQEGIQPKRRRRHMENEKTKRVSFRLANSISQV ::::::.::.::: :::::::::::.::::::::::::::::..::.:::::.:.::: gi|739 EDSDSEEVSSESGYSTPQGFPWPPYVQEGIQPKRRRRHMENERAKRMSFRLASSVSQV 1270 1280 1290 1300 1310 1320 208 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 22:08:58 2009 done: Fri Mar 13 22:13:44 2009 Total Scan time: 679.690 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]