# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg08313.fasta.nr -Q ../query/mKIAA1335.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1335, 305 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7906562 sequences Expectation_n fit: rho(ln(x))= 5.5311+/-0.000199; mu= 8.1448+/- 0.011 mean_var=119.6910+/-22.504, 0's: 40 Z-trim: 80 B-trim: 0 in 0/67 Lambda= 0.117231 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|126540714|emb|CAM46169.1| chromodomain helicase (2711) 1884 330.4 2.3e-87 gi|223462579|gb|AAI50807.1| Chromodomain helicase (2711) 1884 330.4 2.3e-87 gi|26348885|dbj|BAC38082.1| unnamed protein produc ( 891) 1875 328.3 3.3e-87 gi|126540715|emb|CAM46170.1| chromodomain helicase (1184) 1867 327.1 1e-86 gi|74209142|dbj|BAE24963.1| unnamed protein produc (1733) 1867 327.3 1.3e-86 gi|148674355|gb|EDL06302.1| chromodomain helicase (2695) 1854 325.3 7.8e-86 gi|149043033|gb|EDL96607.1| chromodomain helicase (2698) 1791 314.6 1.3e-82 gi|56203260|emb|CAI22255.1| chromodomain helicase (2715) 1606 283.3 3.3e-73 gi|73920194|sp|Q8TD26.3|CHD6_HUMAN RecName: Full=C (2715) 1601 282.5 6e-73 gi|114682033|ref|XP_001148096.1| PREDICTED: chromo (2713) 1593 281.1 1.5e-72 gi|19421557|gb|AAK56405.1| chromodomain helicase D (2713) 1588 280.3 2.8e-72 gi|149733277|ref|XP_001502820.1| PREDICTED: chromo (2717) 1579 278.8 7.9e-72 gi|73991998|ref|XP_534421.2| PREDICTED: similar to (2713) 1559 275.4 8.2e-71 gi|56203261|emb|CAI22256.1| chromodomain helicase ( 373) 1544 271.8 1.3e-70 gi|119596380|gb|EAW75974.1| chromodomain helicase ( 952) 1544 272.3 2.4e-70 gi|119596384|gb|EAW75978.1| chromodomain helicase (2731) 1544 272.9 4.8e-70 gi|119596382|gb|EAW75976.1| chromodomain helicase (2750) 1544 272.9 4.8e-70 gi|194384680|dbj|BAG59500.1| unnamed protein produ (1014) 1482 261.9 3.6e-67 gi|114682041|ref|XP_001148020.1| PREDICTED: chromo (2693) 1482 262.4 6.8e-67 gi|74187527|dbj|BAE36715.1| unnamed protein produc ( 198) 1336 236.3 3.4e-60 gi|126331685|ref|XP_001369410.1| PREDICTED: simila ( 288) 1310 232.1 9.2e-59 gi|126291802|ref|XP_001381614.1| PREDICTED: simila (2716) 1317 234.5 1.7e-58 gi|149636100|ref|XP_001509337.1| PREDICTED: simila (2613) 1162 208.2 1.3e-50 gi|126540713|emb|CAM46168.1| chromodomain helicase ( 217) 1073 191.9 8.9e-47 gi|117306330|gb|AAI26832.1| Unknown (protein for I ( 204) 991 178.0 1.3e-42 gi|73992000|ref|XP_866157.1| PREDICTED: similar to ( 190) 964 173.4 2.9e-41 gi|224077261|ref|XP_002195547.1| PREDICTED: chromo (2673) 955 173.2 4.6e-40 gi|37604153|gb|AAH59807.1| Chd6 protein [Mus muscu ( 250) 877 158.8 9.3e-37 gi|56203259|emb|CAI22254.1| chromodomain helicase ( 149) 850 154.0 1.6e-35 gi|190352255|gb|ACE76523.1| CHD5-like protein [Sus ( 169) 843 152.9 3.9e-35 gi|126328965|ref|XP_001377284.1| PREDICTED: simila ( 119) 483 91.8 6.6e-17 gi|126328963|ref|XP_001377271.1| PREDICTED: simila ( 131) 405 78.7 6.5e-13 gi|119607236|gb|EAW86830.1| chromodomain helicase (3011) 356 72.0 1.6e-09 gi|118763666|gb|AAI28692.1| LOC443577 protein [Xen (1848) 313 64.5 1.8e-07 gi|47215569|emb|CAG10740.1| unnamed protein produc (3070) 313 64.7 2.4e-07 gi|189520779|ref|XP_699360.3| PREDICTED: similar t (2699) 306 63.5 5.1e-07 gi|145574851|gb|ABP84383.1| RNAse E [Pseudomonas m (1012) 251 53.7 0.00017 gi|152028610|gb|ABS26378.1| restriction endonuclea ( 669) 244 52.3 0.0003 gi|109504509|ref|XP_001076544.1| PREDICTED: hypoth ( 264) 229 49.3 0.00094 gi|116502858|gb|EAU85753.1| predicted protein [Cop ( 438) 230 49.7 0.0012 gi|221486021|gb|EEE24291.1| conserved hypothetical ( 241) 225 48.5 0.0014 gi|150256136|gb|EDM93777.1| Chromosome segregation ( 720) 229 49.8 0.0018 gi|156619183|gb|ABU88270.1| RNA polymerase beta' s (1521) 229 50.2 0.0029 gi|189539811|ref|XP_001919413.1| PREDICTED: hypoth ( 245) 218 47.4 0.0033 gi|115625739|ref|XP_800750.2| PREDICTED: hypotheti ( 135) 214 46.4 0.0035 gi|210094202|gb|EEA42389.1| hypothetical protein B ( 229) 216 47.0 0.0039 gi|189333922|dbj|BAG42992.1| ribonuclease [Burkhol (1054) 224 49.1 0.0042 gi|184192042|gb|ACC70007.1| ribonuclease, Rne/Rng (1092) 224 49.1 0.0042 gi|160342792|gb|ABX15878.1| ribonuclease, Rne/Rng (1111) 224 49.1 0.0043 gi|190660320|gb|EDV57512.1| GG24879 [Drosophila er ( 540) 220 48.1 0.0043 >>gi|126540714|emb|CAM46169.1| chromodomain helicase DNA (2711 aa) initn: 1988 init1: 1884 opt: 1884 Z-score: 1724.7 bits: 330.4 E(): 2.3e-87 Smith-Waterman score: 1884; 99.301% identity (99.301% similar) in 286 aa overlap (2-287:1-286) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVLW :::::::::::::::::::::::::::::::::::::::::::: : gi|126 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 240 250 260 270 280 290 mKIAA1 PFTVA gi|126 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 300 310 320 330 340 350 >>gi|223462579|gb|AAI50807.1| Chromodomain helicase DNA (2711 aa) initn: 1988 init1: 1884 opt: 1884 Z-score: 1724.7 bits: 330.4 E(): 2.3e-87 Smith-Waterman score: 1884; 99.301% identity (99.301% similar) in 286 aa overlap (2-287:1-286) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 MKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|223 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVLW :::::::::::::::::::::::::::::::::::::::::::: : gi|223 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 240 250 260 270 280 290 mKIAA1 PFTVA gi|223 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 300 310 320 330 340 350 >>gi|26348885|dbj|BAC38082.1| unnamed protein product [M (891 aa) initn: 1979 init1: 1875 opt: 1875 Z-score: 1722.1 bits: 328.3 E(): 3.3e-87 Smith-Waterman score: 1875; 98.951% identity (98.951% similar) in 286 aa overlap (2-287:1-286) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 MKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|263 NLYTTEEEADTLFSRKLTSHNGMVDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVLW :::::::::::::::::::::::::::::::::::::::::::: : gi|263 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 240 250 260 270 280 290 mKIAA1 PFTVA gi|263 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 300 310 320 330 340 350 >>gi|126540715|emb|CAM46170.1| chromodomain helicase DNA (1184 aa) initn: 1875 init1: 1244 opt: 1867 Z-score: 1713.3 bits: 327.1 E(): 1e-86 Smith-Waterman score: 1867; 98.951% identity (98.951% similar) in 286 aa overlap (2-287:1-285) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SKKA-REQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVLW :::::::::::::::::::::::::::::::::::::::::::: : gi|126 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 240 250 260 270 280 290 mKIAA1 PFTVA gi|126 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 300 310 320 330 340 350 >>gi|74209142|dbj|BAE24963.1| unnamed protein product [M (1733 aa) initn: 1875 init1: 1244 opt: 1867 Z-score: 1711.4 bits: 327.3 E(): 1.3e-86 Smith-Waterman score: 1867; 98.951% identity (98.951% similar) in 286 aa overlap (2-287:1-285) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 SKKA-REQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVLW :::::::::::::::::::::::::::::::::::::::::::: : gi|742 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 240 250 260 270 280 290 mKIAA1 PFTVA gi|742 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 300 310 320 330 340 350 >>gi|148674355|gb|EDL06302.1| chromodomain helicase DNA (2695 aa) initn: 1862 init1: 1231 opt: 1854 Z-score: 1697.3 bits: 325.3 E(): 7.8e-86 Smith-Waterman score: 1854; 98.944% identity (98.944% similar) in 284 aa overlap (4-287:1-283) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SKKA-REQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVLW :::::::::::::::::::::::::::::::::::::::::::: : gi|148 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 240 250 260 270 280 290 mKIAA1 PFTVA gi|148 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 300 310 320 330 340 350 >>gi|149043033|gb|EDL96607.1| chromodomain helicase DNA (2698 aa) initn: 1973 init1: 1791 opt: 1791 Z-score: 1639.7 bits: 314.6 E(): 1.3e-82 Smith-Waterman score: 1791; 94.406% identity (97.552% similar) in 286 aa overlap (2-287:1-286) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|149 MKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGTKGSKDREPKPKR ..::::::::::::::: :::::::.:::::::::::::::::::::::.:::::::::: gi|149 DFYTTEEEADTLFSRKLMSHNGMEDNGGRGTGVKKKRKKKEPGEQEGTKASKDREPKPKR 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRTK ::::::::::::::::::::::::.::::::::::: ::::::::::::::::: : ::: gi|149 KREPKEPKEPRRAKEPKRAKEPKEAKQKDGVKKPRKPREASGTKEGKEKRSCTDCGPRTK 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSGR ::::..::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|149 PKKASKDQGPTPVERKKKGKRKNETTVESLELDQSLPNPSLQSPEEPSESADSQKRRSGR 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVLW :::::::::::::::::::::::::::::::::::::::::::: : gi|149 QVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILAS 240 250 260 270 280 290 mKIAA1 PFTVA gi|149 KTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMKH 300 310 320 330 340 350 >>gi|56203260|emb|CAI22255.1| chromodomain helicase DNA (2715 aa) initn: 1645 init1: 1052 opt: 1606 Z-score: 1470.5 bits: 283.3 E(): 3.3e-73 Smith-Waterman score: 1606; 85.017% identity (94.774% similar) in 287 aa overlap (2-287:1-287) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK :::::::::::::.:..:::::::::::::::::::::::: :: :.::..:.::::.: gi|562 MKMKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDCSTDQEEKIEDVASHCLPQK 10 20 30 40 50 70 80 90 100 110 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGT-KGSKDREPKPK .:::.:::: ::: ::.::::::::::: ::::::::::::::.:::. ::::::::::: gi|562 DLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPK 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 RKREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRT ::::::::::::.:::::.::: :: :::::.:: :: ::::::::.:::::::: ..:: gi|562 RKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAART 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 KSKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSG ::.:::.::::::::.:::::::.::::::::::..: ::::.:::: .::.:::::::: gi|562 KSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSG 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 RQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVL ::::::::::::::::::::::::::::::::::::::::::::: : gi|562 RQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILA 240 250 260 270 280 290 300 mKIAA1 WPFTVA gi|562 SKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMK 300 310 320 330 340 350 >>gi|73920194|sp|Q8TD26.3|CHD6_HUMAN RecName: Full=Chrom (2715 aa) initn: 1645 init1: 1047 opt: 1601 Z-score: 1466.0 bits: 282.5 E(): 6e-73 Smith-Waterman score: 1601; 84.669% identity (94.774% similar) in 287 aa overlap (2-287:1-287) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK :::::::::::::.:..:::::::::::::::::::::::: :: :.::..:.::::.: gi|739 MKMKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDCSTDQEEKIEDVASHCLPQK 10 20 30 40 50 70 80 90 100 110 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGT-KGSKDREPKPK .:::.:::: ::: ::.::::::::::: ::::::::::::::.:::. ::::::::::: gi|739 DLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPK 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 RKREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRT ::::::::::::.:.:::.::: :: :::::.:: :: ::::::::.:::::::: ..:: gi|739 RKREPKEPKEPRKAEEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAART 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 KSKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSG ::.:::.::::::::.:::::::.::::::::::..: ::::.:::: .::.:::::::: gi|739 KSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSG 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 RQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVL ::::::::::::::::::::::::::::::::::::::::::::: : gi|739 RQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILA 240 250 260 270 280 290 300 mKIAA1 WPFTVA gi|739 SKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMK 300 310 320 330 340 350 >>gi|114682033|ref|XP_001148096.1| PREDICTED: chromodoma (2713 aa) initn: 1632 init1: 1052 opt: 1593 Z-score: 1458.7 bits: 281.1 E(): 1.5e-72 Smith-Waterman score: 1593; 84.912% identity (94.737% similar) in 285 aa overlap (4-287:1-285) 10 20 30 40 50 60 mKIAA1 LMKMKIQKKEKQLSKLRALNHSPMSDASVNFDYKSPSPFDCSPDQGENIEEAANHCLPHK :::::::::::.:..:::::::::::::::::::::::: :: :.::..:.::::.: gi|114 MKIQKKEKQLSNLKVLNHSPMSDASVNFDYKSPSPFDCSTDQEEKIEDVASHCLPQK 10 20 30 40 50 70 80 90 100 110 mKIAA1 NLYTTEEEADTLFSRKLTSHNGMEDSGGRGTGVKKKRKKKEPGEQEGT-KGSKDREPKPK .:::.:::: ::: ::.::::::::::: ::::::::::::::.:::. ::::::::::: gi|114 DLYTAEEEAATLFPRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSKDREPKPK 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 RKREPKEPKEPRRAKEPKRAKEPKETKQKDGVKKPRKHREASGTKEGKEKRSCTDYGSRT ::::::::::::.:::::.::: :: :::::.:: :: ::::::::.:::::::: ..:: gi|114 RKREPKEPKEPRKAKEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAART 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 KSKKASREQGPTPVERKKKGKRKNETTVESLELDHSLPNPSLQSPEEPSESADSQKRRSG ::.:::.::::::::.:::::::.::::::::::..: ::::.:::: .::.:::::::: gi|114 KSRKASKEQGPTPVEKKKKGKRKSETTVESLELDQGLTNPSLRSPEESTESTDSQKRRSG 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 RQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEVQPLRALTHMTEVVL ::::::::::::::::::::::::::::::::::::::::::::: : gi|114 RQVKRRKYNEDLDFKVVDDDGETIAVLGAGRTSALSASTLAWQAEEPPEDDANIIEKILA 240 250 260 270 280 290 300 mKIAA1 WPFTVA gi|114 SKTVQEVHPGEPPFDLELFYVKYRNFSYLHCKWATMEELEKDPRIAQKIKRFRNKQAQMK 300 310 320 330 340 350 305 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 19:27:54 2009 done: Fri Mar 13 19:33:30 2009 Total Scan time: 780.830 Total Display time: 0.160 Function used was FASTA [version 34.26.5 April 26, 2007]