FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0630.ptfa, 603 aa vs ./tmplib.26680 library 1768414 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.1664+/-0.00696; mu= -5.4491+/- 0.458 mean_var=280.2529+/-71.546, 0's: 0 Z-trim: 6 B-trim: 143 in 1/35 Lambda= 0.0766 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4107 ( 1176 res) mfj68342 (1176) 658 86 1.5e-17 >>mKIAA4107 ( 1176 res) mfj68342 (1176 aa) initn: 1351 init1: 543 opt: 658 Z-score: 407.6 bits: 86.4 E(): 1.5e-17 Smith-Waterman score: 1757; 50.079% identity (59.176% ungapped) in 631 aa overlap (13-603:603-1176) 10 20 30 40 mKIAA0 SLLNYQSALYPSSAAPVPGVAQQGVSLQPGTTQICTQTDPFQ ::: . .:: ... :: ::.:::.. :::: mKIAA4 TPFITHVAPSTSTNLTMTFNNQLTTVHNQPSAASMAAVAPRSMPLQTGTAQICARPDPFQ 580 590 600 610 620 630 50 60 70 80 90 100 mKIAA0 QTFIVCPPAFQTGLQAT-TKHSGFPVRMDNAVPIVPQAPAAQPLQIQSGVLTQGSCTPLM :..:::::.:: ::::. .::.:. :::.:::::: :::.::::::: :.:.: mKIAA4 QALIVCPPGFQ-GLQASPSKHAGYSVRMENAVPIVTQAPGAQPLQIQPGLLAQ------- 640 650 660 670 680 110 120 130 140 150 160 mKIAA0 VATLHPQVATITPQYAVPFTLSCAAGRPALVEQTAAVLQAWPGGTQQILLPSAWQQLPGV ::::::.:::::: ::::: :: mKIAA4 --------------------------------------QAWPGGAQQILLPPAWQQLTGV 690 700 170 180 190 200 210 220 mKIAA0 ALHNSVQPAAVIPEAMGSSQQLADWRNAHSHGNQYSTIMQQPSLLTNHVTLATAQPLNVG : :.::: ::::::.:...::::::::.:.::..:. :::::.:::.:::: .::::::: mKIAA4 ATHTSVQHAAVIPETMAGTQQLADWRNTHAHGSHYNPIMQQPALLTGHVTLPAAQPLNVG 710 720 730 740 750 760 230 240 250 260 mKIAA0 VAHVVRQQQSSSLPSKKNKQ-SAPVSSKSSLEVLPSQVYS-----------------LVG ::::.::: .:. :.:.:: .. : . :. :: ::. : .: mKIAA4 VAHVMRQQPTSTTSSRKSKQHQSSVRNVSTCEVTSSQAISSPQRSKRVKENTPPRCAMVH 770 780 790 800 810 820 270 280 290 300 310 mKIAA0 SSPLRTTS------SYNSLVPVQDQHQPIIIPDTPSPPVSVITIRSDTDEEEDNKYKPNS ::: .:: . : . . :.: :.::::::: :::::: :::::::..:. :.: mKIAA4 SSPACSTSVTCGWGDVASSTTRERQRQTIVIPDTPSPTVSVITISSDTDEEEEQKHAPTS 830 840 850 860 870 880 320 330 340 350 360 370 mKIAA0 SSLKARSNVISYVTVNDSPDSDSSL-SSPYSTDTLSALRGNSGTLLEGPGRPAADGIGTR . : :.:::: :::.::: :::: .::::.. .. :.. .: . : . : mKIAA4 TVSKQRKNVISCVTVHDSPYSDSSSNTSPYSVQQRTGHNGTNTLDTKGGLENHCTG-NPR 890 900 910 920 930 940 380 390 400 410 420 mKIAA0 TIIVPPLKTQ----------LGDCTVATQASGLLSSKTKP-VASVSGQSSGCCITPTGYR :::::::::: :: :.. :. ..::.. :.:.::.::: .:: mKIAA4 TIIVPPLKTQASEVLVECDSLGPAISASHHSSSFKSKSSSTVTSTSGHSSGSSSGAIAYR 950 960 970 980 990 1000 430 440 450 460 470 480 mKIAA0 AQRGGA--SAVQPLNLSQNQQSSSASTSQERSSNPAPRRQQAFVAP-LSQAPYAFQHGSP :: : . ::::::: :: .: .:... :::::...: ..::::.: :.:: mKIAA4 QQRPGPHFQQQQPLNLSQAQQHMAA----DRTGSH--RRQQAYITPTMAQAPYTFPHNSP 1010 1020 1030 1040 1050 490 500 510 520 530 540 mKIAA0 LHSTGHPHLAPAPAHLPSQPHLYTYAAPTSAAALGSTSSIAHLFSPQGSSRHAAAYTTHP :.: ::::: : ::::.:::::::.::: :::::...::: . :::.::.. .:..: mKIAA4 SHGTVHPHLAAA-AHLPTQPHLYTYTAPT---ALGSTGTVAHLVASQGSARHTVQHTAYP 1060 1070 1080 1090 1100 1110 550 560 570 580 590 600 mKIAA0 STLVHQVPVSVGPSLLTSASVAPAQYQHQFATQSYIGSSRGSTIYTGYPLSPTKISQYSY ...:::::::.:: .: : .. :.:: ::: :.::..: .::.::::::::.:..:: : mKIAA4 ASIVHQVPVSMGPRVLPSPTIHPSQYPAQFAHQTYISASPASTVYTGYPLSPAKVNQYPY 1120 1130 1140 1150 1160 1170 mKIAA0 L . mKIAA4 I 603 residues in 1 query sequences 1768414 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:24:51 2006 done: Mon Mar 27 10:24:52 2006 Scan time: 0.780 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]