# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg08145.fasta.nr -Q ../query/mKIAA1809.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1809, 155 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7917339 sequences Expectation_n fit: rho(ln(x))= 5.9646+/-0.000195; mu= 3.6583+/- 0.011 mean_var=106.2472+/-20.335, 0's: 48 Z-trim: 51 B-trim: 173 in 3/65 Lambda= 0.124427 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|12150278|gb|AAG49025.1|AF080216_1 C2H2-type zin ( 797) 971 184.2 3.4e-44 gi|119620443|gb|EAX00038.1| B-cell CLL/lymphoma 11 ( 130) 915 173.5 9.3e-42 gi|7650184|gb|AAF65929.1|AF169037_1 ecotropic vira ( 240) 914 173.6 1.7e-41 gi|26335831|dbj|BAC31616.1| unnamed protein produc ( 243) 914 173.6 1.7e-41 gi|12835560|dbj|BAB23285.1| unnamed protein produc ( 243) 909 172.7 3.1e-41 gi|73969690|ref|XP_865555.1| PREDICTED: similar to ( 739) 915 174.2 3.4e-41 gi|194220710|ref|XP_001917590.1| PREDICTED: simila ( 800) 915 174.2 3.6e-41 gi|29691173|gb|AAO88272.1| B-cell CLL/lymphoma 11A ( 801) 915 174.2 3.6e-41 gi|149044813|gb|EDL97999.1| B-cell CLL/lymphoma 11 ( 773) 914 174.0 4e-41 gi|44887725|sp|Q9QYE3.1|BC11A_MOUSE RecName: Full= ( 773) 914 174.0 4e-41 gi|109500120|ref|XP_223693.4| PREDICTED: similar t ( 774) 914 174.0 4e-41 gi|7546791|gb|AAF63682.1| CTIP1 protein [Mus muscu ( 776) 914 174.0 4e-41 gi|109501070|ref|XP_001057685.1| PREDICTED: simila ( 788) 914 174.0 4e-41 gi|109501068|ref|XP_001057750.1| PREDICTED: simila ( 835) 914 174.0 4.2e-41 gi|56206519|emb|CAI25350.1| B-cell CLL/lymphoma 11 ( 835) 914 174.0 4.2e-41 gi|51475128|gb|AAU04557.1| B-cell lymphoma/leukaem ( 142) 903 171.4 4.4e-41 gi|73969694|ref|XP_865589.1| PREDICTED: similar to ( 243) 906 172.1 4.5e-41 gi|109658218|gb|AAI18228.1| B-cell CLL/lymphoma 11 ( 243) 906 172.1 4.5e-41 gi|62822235|gb|AAY14784.1| unknown [Homo sapiens] ( 128) 901 171.0 5.3e-41 gi|194387108|dbj|BAG59920.1| unnamed protein produ ( 793) 909 173.1 7.5e-41 gi|74187699|dbj|BAE24527.1| unnamed protein produc ( 835) 908 173.0 8.9e-41 gi|18089267|gb|AAH21098.1| B-cell CLL/lymphoma 11A ( 773) 906 172.6 1.1e-40 gi|73969688|ref|XP_865536.1| PREDICTED: similar to ( 773) 906 172.6 1.1e-40 gi|193786207|dbj|BAG51490.1| unnamed protein produ ( 779) 906 172.6 1.1e-40 gi|114577494|ref|XP_001158392.1| PREDICTED: B-cell ( 779) 906 172.6 1.1e-40 gi|114577488|ref|XP_001158335.1| PREDICTED: simila ( 782) 906 172.6 1.1e-40 gi|73969696|ref|XP_538502.2| PREDICTED: similar to ( 782) 906 172.6 1.1e-40 gi|73969692|ref|XP_852365.1| PREDICTED: similar to ( 790) 906 172.6 1.1e-40 gi|44887724|sp|Q9H165.2|BC11A_HUMAN RecName: Full= ( 835) 906 172.6 1.1e-40 gi|11558486|emb|CAC17725.1| B-cell lymphoma/leukae ( 243) 895 170.2 1.8e-40 gi|11558484|emb|CAC17724.1| B-cell lymphoma/leukae ( 773) 895 170.6 4.2e-40 gi|11558482|emb|CAC17723.1| B-cell lymphoma/leukae ( 835) 895 170.6 4.5e-40 gi|224047470|ref|XP_002196842.1| PREDICTED: B-cell ( 748) 886 169.0 1.3e-39 gi|60098489|emb|CAH65075.1| hypothetical protein [ ( 796) 879 167.7 3.2e-39 gi|149640808|ref|XP_001510134.1| PREDICTED: hypoth ( 799) 871 166.3 8.6e-39 gi|38014738|gb|AAH60405.1| MGC68575 protein [Xenop ( 727) 837 160.2 5.5e-37 gi|115313449|gb|AAI23945.1| B-cell CLL/lymphoma 11 ( 797) 828 158.6 1.8e-36 gi|148675955|gb|EDL07902.1| B-cell CLL/lymphoma 11 ( 219) 782 149.8 2.1e-34 gi|114577490|ref|XP_001158177.1| PREDICTED: simila ( 786) 775 149.1 1.3e-33 gi|92096544|gb|AAI15320.1| B-cell CLL/lymphoma 11A ( 829) 739 142.6 1.2e-31 gi|26337461|dbj|BAC32416.1| unnamed protein produc ( 191) 536 105.6 3.8e-21 gi|122890562|emb|CAM13161.1| novel protein similar ( 776) 540 106.9 6.5e-21 gi|194038087|ref|XP_001924852.1| PREDICTED: B-cell ( 968) 471 94.6 4.1e-17 gi|119914089|ref|XP_001251909.1| PREDICTED: simila ( 895) 467 93.8 6.3e-17 gi|73964460|ref|XP_855300.1| PREDICTED: similar to ( 234) 457 91.5 8.1e-17 gi|183637153|gb|ACC64547.1| B-cell CLL/lymphoma 11 ( 175) 453 90.7 1.1e-16 gi|217038299|gb|ACJ76597.1| B-cell lymphoma/leukem ( 606) 456 91.7 1.9e-16 gi|197215621|gb|ACH53016.1| B-cell CLL/lymphoma 11 ( 897) 457 92.0 2.2e-16 gi|54288924|gb|AAV31785.1| B-cell CLL/lymphoma 11B ( 296) 449 90.2 2.6e-16 gi|11558488|emb|CAC17726.1| B-cell lymphoma/leukae ( 823) 455 91.6 2.6e-16 >>gi|12150278|gb|AAG49025.1|AF080216_1 C2H2-type zinc-fi (797 aa) initn: 963 init1: 963 opt: 971 Z-score: 949.8 bits: 184.2 E(): 3.4e-44 Smith-Waterman score: 971; 95.139% identity (95.833% similar) in 144 aa overlap (12-155:22-165) 10 20 30 40 50 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAI : : :::::::::::::::::::::::::::::::: gi|121 MSKGTDEDIFSGVSFFLTRLSRCEPSRRPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAI 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 LTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPP ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|121 LTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKAVDKPP 70 80 90 100 110 120 120 130 140 150 mKIAA1 SPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::::::::::::: : gi|121 SPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHG 130 140 150 160 170 180 gi|121 ALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGS 190 200 210 220 230 240 >>gi|119620443|gb|EAX00038.1| B-cell CLL/lymphoma 11A (z (130 aa) initn: 915 init1: 915 opt: 915 Z-score: 906.0 bits: 173.5 E(): 9.3e-42 Smith-Waterman score: 915; 99.231% identity (100.000% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|119 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|119 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKAVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::::: gi|119 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK 100 110 120 130 >>gi|7650184|gb|AAF65929.1|AF169037_1 ecotropic viral in (240 aa) initn: 914 init1: 914 opt: 914 Z-score: 901.5 bits: 173.6 E(): 1.7e-41 Smith-Waterman score: 914; 99.231% identity (99.231% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|765 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|765 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::: : gi|765 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSA 100 110 120 130 140 150 gi|765 EYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGSPLTPRGPSHT 160 170 180 190 200 210 >>gi|26335831|dbj|BAC31616.1| unnamed protein product [M (243 aa) initn: 914 init1: 914 opt: 914 Z-score: 901.4 bits: 173.6 E(): 1.7e-41 Smith-Waterman score: 914; 99.231% identity (99.231% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|263 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::: : gi|263 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSA 100 110 120 130 140 150 gi|263 EYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGSPLTPRVLHTP 160 170 180 190 200 210 >>gi|12835560|dbj|BAB23285.1| unnamed protein product [M (243 aa) initn: 909 init1: 909 opt: 909 Z-score: 896.5 bits: 172.7 E(): 3.1e-41 Smith-Waterman score: 909; 98.462% identity (99.231% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|128 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::.:::::::::::::::::::::::: : gi|128 SNPVEVGIKVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSA 100 110 120 130 140 150 gi|128 EYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGSPLTPRVLHTP 160 170 180 190 200 210 >>gi|73969690|ref|XP_865555.1| PREDICTED: similar to B-c (739 aa) initn: 915 init1: 915 opt: 915 Z-score: 895.9 bits: 174.2 E(): 3.4e-41 Smith-Waterman score: 915; 99.231% identity (100.000% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|739 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|739 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKAVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::::: gi|739 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGKDEPSSYTCTTCKQPFTSAWFLLQHA 100 110 120 130 140 150 gi|739 QNTHGLRIYLESEHGSPLTPRVGIPSGLGAECPSQPPLHGIHIADNNPFNLLRIPGSVSR 160 170 180 190 200 210 >>gi|194220710|ref|XP_001917590.1| PREDICTED: similar to (800 aa) initn: 915 init1: 915 opt: 915 Z-score: 895.5 bits: 174.2 E(): 3.6e-41 Smith-Waterman score: 915; 99.231% identity (100.000% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|194 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|194 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKAVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::::: gi|194 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGKDEPSSYTCTTCKQPFTSAWFLLQHA 100 110 120 130 140 150 gi|194 QNTHGLRIYLESEHGSPLTPRVGIPSGLGAECPSQPPLHGIHIADNNPFNLLRIPGSVSR 160 170 180 190 200 210 >>gi|29691173|gb|AAO88272.1| B-cell CLL/lymphoma 11A iso (801 aa) initn: 915 init1: 915 opt: 915 Z-score: 895.5 bits: 174.2 E(): 3.6e-41 Smith-Waterman score: 915; 99.231% identity (100.000% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|296 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|296 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKAVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::::: gi|296 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGKDEPSSYTCTTCKQPFTSAWFLLQHA 100 110 120 130 140 150 gi|296 QNTHGLRIYLESEHGSPLTPRVGIPSGLGAECPSQPPLHGIHIADNNPFNLLRIPGSVSR 160 170 180 190 200 210 >>gi|149044813|gb|EDL97999.1| B-cell CLL/lymphoma 11A (z (773 aa) initn: 914 init1: 914 opt: 914 Z-score: 894.7 bits: 174.0 E(): 4e-41 Smith-Waterman score: 914; 99.231% identity (99.231% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|149 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::: : gi|149 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSA 100 110 120 130 140 150 gi|149 EYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGSPLTPRVGIPS 160 170 180 190 200 210 >>gi|44887725|sp|Q9QYE3.1|BC11A_MOUSE RecName: Full=B-ce (773 aa) initn: 914 init1: 914 opt: 914 Z-score: 894.7 bits: 174.0 E(): 4e-41 Smith-Waterman score: 914; 99.231% identity (99.231% similar) in 130 aa overlap (26-155:1-130) 10 20 30 40 50 60 mKIAA1 PGSPDVNRAVVRTPPPPPPPAPQPTMSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP ::::::::::::::::::::::::::::::::::: gi|448 MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGP 10 20 30 70 80 90 100 110 120 mKIAA1 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|448 LGAPEGDHDLLTCGQCQMNFPLGDILIFIEHKRKQCNGSLCLEKGVDKPPSPSPIEMKKA 40 50 60 70 80 90 130 140 150 mKIAA1 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIAGK ::::::::::::::::::::::::::::::::: : gi|448 SNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSA 100 110 120 130 140 150 gi|448 EYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHGLRIYLESEHGSPLTPRVGIPS 160 170 180 190 200 210 155 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 23:16:13 2009 done: Sun Mar 15 23:20:19 2009 Total Scan time: 596.160 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]