FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0717.ptfa, 616 aa vs ./tmplib.26680 library 1768401 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.8731+/-0.00579; mu= 12.7337+/- 0.388 mean_var=169.7283+/-41.572, 0's: 0 Z-trim: 4 B-trim: 127 in 1/35 Lambda= 0.0984 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0740 ( 499 res) mef00769 ( 499) 902 140 4.2e-34 mKIAA4130 ( 194 res) mie08042 ( 194) 385 66 3.1e-12 mKIAA0878 ( 633 res) mpm04342 ( 633) 186 39 0.002 >>mKIAA0740 ( 499 res) mef00769 (499 aa) initn: 1589 init1: 893 opt: 902 Z-score: 704.6 bits: 140.2 E(): 4.2e-34 Smith-Waterman score: 1572; 58.629% identity (60.934% ungapped) in 423 aa overlap (191-613:1-407) 170 180 190 200 210 220 mKIAA0 LVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELGIPYYETSVVAQFGI .::::::::::::::::::::::: :::: mKIAA0 DILPPEKGREVAKELGIPYYETSVFDQFGI 10 20 30 230 240 250 260 270 280 mKIAA0 KDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPKPPPPIIVVPDPPSSSEECP :::::::::::::::::::::::::..::.::::::::::: :::.: ::. ::.. mKIAA0 KDVFDNAIRAALISRRHLQFWKSHLKKVQKPLLQAPFLPPKAPPPVIKVPECPSAGTSDA 40 50 60 70 80 90 290 300 310 320 330 340 mKIAA0 AHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFLMDLSEGELGGPSGSGGPRP : ::..::::::..::... .::::.:::.::::::::::::. :. : .:.: : mKIAA0 ACLLDNPLCADVLFVLHDQEHIFAHRIYLATSSSKFYDLFLMECEESPCWG-GGAGEEVP 100 110 120 130 140 350 360 370 380 390 400 mKIAA0 EDHRSHPEQHHHHHHHHHGRDFLLRAASFDVCESVDEAGGSGPAGLRASTSDGILRGNGT :. . . ..:.. :. . : : .: . : .: :. ... mKIAA0 C--RDFQGRTQSLGSAEEGKEGPQRTPQADPGAS---SGQDLPESL-------ALQMEAS 150 160 170 180 190 410 420 430 440 450 460 mKIAA0 GYLPGRGRVLSSWSRAFVSIQEEMAEDPLTFKSRLMVVVKMDNSIQPGPFRAVLKYLYTG : ..:..::.::..:::...:. .:.. . ..::..: :.: ::::..:..::.: mKIAA0 G---SEGHALSGWSKGFVSMHREVRVNPISKRVGPVTVVRLDPSMQSGPFRTLLRFLYSG 200 210 220 230 240 250 470 480 490 500 510 520 mKIAA0 ELGENERDLMHIAHIAELLEVFDLRMMVANILNNEAFMNQEITKAFHVRRTNRVKECLAK .: :.:.::. .:..::.::.::::::: ::.:.:::::::::::::::..::.::::.: mKIAA0 QLDEKEKDLLGLAQMAEVLEMFDLRMMVENIMNKEAFMNQEITKAFHVRKANRIKECLSK 260 270 280 290 300 310 530 540 550 560 570 580 mKIAA0 GTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPFVESSTREVVFPYTSKSCMRAVLE :::::::: ::::.::::::::: ::.:::::::: ::::..::: .: .: :.:::: mKIAA0 GTFSDVTFTLDDGAISAHKPLLICSCEWMAAMFGGSFVESANREVHLPNINKMSMQAVLE 320 330 340 350 360 370 590 600 610 mKIAA0 YLYTGMFTSSPDLDDMKLIVLANRLCLPHLVALTGN :::: ... . ::: ..::.::::.:: ::::: mKIAA0 YLYTKQLSPNLDLDPLELIALANRFCLTHLVALQFHNANQLAAWCLHHICTNYNSVCSKF 380 390 400 410 420 430 mKIAA0 RKEIKSKSADNQEYFERHRWPPVWYLKEEDHYQRVKREREKEDLALNKHHSRRKWCFWHS 440 450 460 470 480 490 >>mKIAA4130 ( 194 res) mie08042 (194 aa) initn: 350 init1: 227 opt: 385 Z-score: 312.0 bits: 66.2 E(): 3.1e-12 Smith-Waterman score: 410; 39.500% identity (45.402% ungapped) in 200 aa overlap (40-236:8-184) 10 20 30 40 50 60 mKIAA0 PTLEITPSHVVVSQLMDSDMDYERPNVETIKCVVVGDNAVGKTRLICARACNATLTQYQL : :.:::.: ::: :. .... :. mKIAA4 VMAAIRKKLVIVGDGACGKTCLL------IVFSKDQF 10 20 30 70 80 90 100 110 120 mKIAA0 LATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFG--DHHKDRRFAYGRSDVV ..::::. ..: . :: : .: : :::: : :. . : ..: .::. mKIAA4 PEVYVPTVF--ENYVADIEV--------DGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 40 50 60 70 80 130 140 150 160 170 180 mKIAA0 VLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVILVGCQLDLRYADLEAVNRARRPLARPI ..:::: .:.::... : ::.::::: .:.:::: . ::: . ..:: ::. . mKIAA4 LMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE-----HTRRELAK-M 90 100 110 120 130 190 200 210 220 230 240 mKIAA0 KPNEILPPEKGREVAKELG-IPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKSHLR : .: . ::.::..:...: . :.: :. .. :...::. : :::: .:: mKIAA4 K-QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLIL 140 150 160 170 180 190 250 260 270 280 290 300 mKIAA0 NVQRPLLQAPFLPPKPPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQERVRIFAHK >>mKIAA0878 ( 633 res) mpm04342 (633 aa) initn: 317 init1: 158 opt: 186 Z-score: 153.9 bits: 38.6 E(): 0.002 Smith-Waterman score: 242; 22.989% identity (28.916% ungapped) in 522 aa overlap (96-602:91-520) 70 80 90 100 110 120 mKIAA0 QYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDDVSVSLRLWDTFGDHHKDRRFAYGRSD :: : : :: : . : : .: mKIAA0 ESSLLLNAASTVARPVFTEYQASAFGNVKLVVHDCPV----WDIFDSDWYTSRNLIGGAD 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 VVVLCFSIANPNSLHHVKTMWYPEIKHFCPRAPVIL--VGCQLDLRYADLEAVNRARRPL ..:. ... . :.:.:: . : ::. .:::. :: . . .: . :: mKIAA0 IIVIKYNVNDKFSFHEVKDNYIPVIKRASNSVPVIIAAVGTRQN---EELPCTC----PL 120 130 140 150 160 190 200 210 220 230 240 mKIAA0 ARPIKPNEILPPEKGREVAKELGIPYYETSVVAQFGIKDVFDNAIRAALISRRHLQFWKS . . . : : ..::::: : : . .: : : .... .:. . :. mKIAA0 CTSDRGSCVTTTE-GIQLAKELGATYLELHSLDDFYIGKYFGGVLEYFMIQALN---QKT 170 180 190 200 210 220 250 260 270 280 290 mKIAA0 HLRNVQRPLLQA--PFLPPK--PPPPIIVVPDPPSSSEECPAHLLEDPLCADVILVLQER . .: . .. . ::. : . :. : . .:: :.::.. : mKIAA0 SEKMKKRKMTSSFHGIRPPQLEQPEKMPVLKAEASHYHSDLNNLLLCCQCVDVVFYHPEV 230 240 250 260 270 280 300 310 320 330 340 350 mKIAA0 VRIF-AHKIYLSTSSSKFYDLFLMDLSEGELGGPSGSGGPRPEDHRSHPEQHHHHHHHHH . . :::: : . : :. :: .. .:. mKIAA0 TGVVEAHKIVLCSVSHVFMLLF-------NVKSPA------------------------- 290 300 310 360 370 380 390 400 410 mKIAA0 GRDFLLRAASFDVCESVDEAGGSGPAGLRASTSDGILRGNGTGYLPGRGRVLSSWSRAFV :. .: . .: :.. .. : . ::: . mKIAA0 -----------DIQDS---------SIIR--TTQDLFAINRDAVLPGAS----------- 320 330 340 420 430 440 450 460 470 mKIAA0 SIQEEMAEDPLTFKSRLMVVVKMDNSIQPGPFRAVLKYLYTGELG--ENERDLMHIAHIA :: .. :: :.:: ... . . .:...:.: . : :.:. . .. mKIAA0 --QEAPSNPPLP------VIVK--DALFCSCLSDILRFIYSGAFQWEELEEDVRR--KLK 350 360 370 380 480 490 500 510 520 530 mKIAA0 ELLEVFDLRMMVANILNNEAFMN-QEITKAFHVRR-----TNRVKECLAKGTFSDVTFIL . .: :. : ::.. . .: . :....:. .. .: : : ..::.: . mKIAA0 DSGDVSDIIEKVKCILKTPGKINCLRNCKTYQARKPLWFYNTSLKFFLNKPMLADVVFEI 390 400 410 420 430 440 540 550 560 570 580 590 mKIAA0 DDGTISAHKPLLISSCDWMAAMFGGPFVESSTREVVFPYTSKSCMRAVLEYLYTGMFTSS . .:. ::. .:.. :. :::::.: ..:... . .:: . . :::::: . mKIAA0 QGATVPAHRAILVARCEVMAAMFNGNYMEAKSVLIPVYGVSKETFLSFLEYLYTDSCCPA 450 460 470 480 490 500 600 610 mKIAA0 PDLDDMKLIVLANRLCLPHLVALTGN .. : :.. :. mKIAA0 GIFQAMCLLICAEMYQVSRLQHICELFIITQLQSMPSRELASMNLDIVDLLKKAKFHHSD 510 520 530 540 550 560 616 residues in 1 query sequences 1768401 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:27:05 2006 done: Mon Mar 27 10:27:06 2006 Scan time: 0.810 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]