FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1498.ptfa, 1495 aa vs ./tmplib.26680 library 1767522 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 13.5184+/-0.0106; mu= -21.1673+/- 0.700 mean_var=643.8936+/-157.836, 0's: 0 Z-trim: 20 B-trim: 24 in 1/35 Lambda= 0.0505 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00386 ( 769 res) mbe05021 ( 769) 313 39 0.0053 >>mFLJ00386 ( 769 res) mbe05021 (769 aa) initn: 307 init1: 177 opt: 313 Z-score: 146.3 bits: 38.8 E(): 0.0053 Smith-Waterman score: 383; 30.556% identity (37.931% ungapped) in 396 aa overlap (1103-1493:166-489) 1080 1090 1100 1110 1120 1130 mKIAA1 VTTNLTPVQTPTRSLVTQVSQATGVQLPGKTITPAAHFQLLRQQQQQQQQQQQQQQTSQV : :: ...:: . ::::::::::: .: mFLJ00 LGAMGQPLPLSGQPPPGTSGMAPHGMAVVSTATPQTQLQLQQVALQQQQQQQQQQQFQQQ 140 150 160 170 180 190 1140 1150 1160 1170 1180 1190 mKIAA1 QVPQLQSQAQSPAQIKAVSKLGPEHIIKMQKQKMQLPPQPPPPQAQPGPPQQPAQVQVQT :. ::.: :. : :.:..:. ::: . :: :. :: mFLJ00 QAA-LQQQQQQQQQ---------------QQQQQQF-------QAQQNAMQQQFQAVVQQ 200 210 220 230 1200 1210 1220 1230 1240 1250 mKIAA1 PQPPQQQQSPQLTTVTAPRPGALLTGTTVTNLQVARLLQAQGQMQTQTPQPAQVAL-AKP : ::::. .: . . . :. :. :: :.: : : : :: :.: mFLJ00 QQLQQQQQQQHLIKLHHQSQQQ-----QIQQQQLQRM--AQLQLQQQQQQQQQQALQAQP 240 250 260 270 280 1260 1270 1280 1290 1300 1310 mKIAA1 PVVSVPAAVVSSPGVTTLPMNVAGIS-VAIGQPQKTAGQTVVAQPVNVQQLLKYKQQTAV :. . . : .::.... . :: : :. .:: .: . mFLJ00 PMQQPSMQQPQPPPSQALPQQLSQLHHPQHHQPPPQAQQSPIAQ----------NQPPQI 290 300 310 320 330 1320 1330 1340 1350 1360 mKIAA1 QQQKAIQPQVAQGQAAVQQKLTTQQITTQGPQQKVAYAAQPALKTQFLTTP--ISQAQKL :. :: :.:.:: :: . :::: :: :. .: ..: : mFLJ00 PPQSQSQPLVSQAQA------------LPGP---MLYAAQQQLK--FVRAPMVVQQPQVQ 340 350 360 370 1370 1380 1390 1400 1410 1420 mKIAA1 AGTQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQASPQTVTLTQATAAGQQVQMIPT .:::: :.: ::.. : . : :.:: . : .: ...:. .. . ::::: . mFLJ00 PQVQQVQPQVQ----PQAAVQAAQ--SAQMVAPGVQ-VSQSSLTMLSSPSPGQQVQTPQS 380 390 400 410 420 430 1430 1440 1450 1460 1470 1480 mKIAA1 VTATAQLVQQKLIQQQVVTTASASLQTPGGPSPAQ-LPASSDSPSQQPKLQMRVPAVRLK . : : : ...... .:::.. ::. : .:::.: . :.: .. mFLJ00 MPPPPQPSPQPGSQP------NSNVSSGPAPSPSSFLPSPSPQPSQSP-VTARTPQ-NFS 440 450 460 470 480 1490 mKIAA1 TPTKPPCQ .:. : mFLJ00 VPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKD 490 500 510 520 530 540 1495 residues in 1 query sequences 1767522 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:46:38 2006 done: Mon Mar 27 10:46:40 2006 Scan time: 1.260 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]