FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0962.ptfa, 820 aa
 vs ./tmplib.26680 library

1768197 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.2080+/-0.00391; mu= 14.1279+/- 0.260
 mean_var=84.3547+/-19.392, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1396

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00095  ( 200 res)   mfj57291                   ( 200)  230   56 4.6e-09
mKIAA1830  ( 477 res)   mpm12107                   ( 477)  158   42  0.0002


>>mFLJ00095  ( 200 res)   mfj57291                        (200 aa)
 initn: 186 init1: 140 opt: 230  Z-score: 255.0  bits: 56.1 E(): 4.6e-09
Smith-Waterman score: 230;  48.052% identity (48.684% ungapped) in 77 aa overlap (69-144:9-85)

       40        50        60        70        80        90        
mKIAA0 CPFPLWEGREMELKRLGVSWRFLMVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYK
                                     .:::.   . :.:::....:.. ::::.:.
mFLJ00                       PNMADQRQRSLSTSGESLYHVLGLDKNATSDDIKKSYR
                                     10        20        30        

      100       110        120       130       140       150       
mKIAA0 KLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGDAGENQGYQKQQREHR
       ::: ..::::: : : : :.: .:..:. ::..  ::. ::.::. :             
mFLJ00 KLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVN
       40        50        60        70        80        90        

       160       170       180       190       200       210       
mKIAA0 FRHFHENFYFDESFFHFPFNAERRDSGDEKYLLHFSHYVNEVLPESFKRPYLIKITSDWC
                                                                   
mFLJ00 TYFVLSSWWAKALFVVCGLLTCCYCCCCLCCCFNCCCGKCKPKAPEGEETEFYVSPEDLE
      100       110       120       130       140       150        

>>mKIAA1830  ( 477 res)   mpm12107                        (477 aa)
 initn:  89 init1:  89 opt: 158  Z-score: 171.7  bits: 41.9 E(): 0.0002
Smith-Waterman score: 158;  20.179% identity (22.727% ungapped) in 223 aa overlap (198-407:53-263)

       170       180       190       200            210       220  
mKIAA0 DESFFHFPFNAERRDSGDEKYLLHFSHYVNEVLPESFKRP-----YLIKITSDWCFSCIH
                                     : : ::::       .:. . . ::  : .
mKIAA1 ANAVGRRSWAALRLCAAVILLDLAVCKGFVEDLNESFKDNRKDDIWLVDFYAPWCGHCKK
             30        40        50        60        70        80  

            230         240       250       260       270          
mKIAA0 IEPVWKEVVQELEGLG--VGIGVVHAGYERRLAHHLGAHSTPSILGVISGKITF-FHNAV
       .::.:.::  :....:  : .: . :     .: ..:... :.:  ...: ... ...  
mKIAA1 LEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTI-KLLKGDLAYNYRGPR
             90       100       110       120        130       140 

     280       290       300       310       320        330        
mKIAA0 VHENLRQFVESLLPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQTPA-VPLMYKLTAF
       ..... .:.. .  : :.. . ....      ...  : : ..:    .  ::  :    
mKIAA1 TKDDIIEFAHRV-SGALIRPLPSQQM------FDHVRKRHRVFFVYIGGESPLKEKYID-
             150        160             170       180       190    

      340       350       360       370           380       390    
mKIAA0 AYKDYVSFGYVYVGLRGVEEMTRQYNVNLYTPTMLIFKEHI----NKPADVIQARGLKKQ
       : .. . . : .    . :... .: .    :..:.::.      ..  :   .  ....
mKIAA1 AASELIVYTYFF---SASEDVVPEYVTLKEMPAVLVFKDDTYFVYDEYEDGDLSSWISRE
           200          210       220       230       240       250

          400       410       420       430       440       450    
mKIAA0 VIEDFIAQNKYLLASRLTSQRLFHELCPVKRSHRQRKYCVVLLTAETNKVSKPFEAFLSF
        ........ .::                                               
mKIAA1 RFQNYLTMDGFLLYELGDTGKLVAIAVIDEKNTSLEHTRLKSIIQEVARDFRDHFHRDFQ
              260       270       280       290       300       310




820 residues in 1 query   sequences
1768197 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:32:47 2006 done: Mon Mar 27 10:32:48 2006
 Scan time:  0.880 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]