FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1048.ptfa, 543 aa vs ./tmplib.26680 library 1768474 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.9632+/-0.00709; mu= -4.5762+/- 0.462 mean_var=465.6645+/-115.743, 0's: 0 Z-trim: 16 B-trim: 0 in 0/36 Lambda= 0.0594 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mFLJ00386 ( 769 res) mbe05021 ( 769) 394 48 3.2e-06 mKIAA0192 ( 1146 res) msp04171 (1146) 286 39 0.0025 >>mFLJ00386 ( 769 res) mbe05021 (769 aa) initn: 441 init1: 256 opt: 394 Z-score: 204.0 bits: 48.0 E(): 3.2e-06 Smith-Waterman score: 403; 29.425% identity (33.756% ungapped) in 452 aa overlap (10-430:141-565) 10 20 30 mKIAA1 QPKAQATPSQPLQSSQPKQPQAPPTPQQTPATQTQGLPT ::: : . : :: : . .:. . mFLJ00 GPTPGAAGIGMPPRGPGQSLGGMGGLGAMGQPL----PLSGQPPPG---TSGMAPHGMAV 120 130 140 150 160 40 50 60 70 80 90 mKIAA1 QAQATPQHQ-QQHLLKQQQQQQQQPQQPTAPPQPAGTFYQQQQQQQQQQAQTQQFQAVHP . :::: : : . . ::::::: :: : : :::::::::: : ::::: . mFLJ00 VSTATPQTQLQLQQVALQQQQQQQQQQQFQQQQAA---LQQQQQQQQQQQQQQQFQAQQN 170 180 190 200 210 220 100 110 120 130 140 mKIAA1 AAQQPVTAQFPVGS-QGGAQQQLMQNFYHQQQQQQQQQQQL--MAQ-----------QAA : :: : . : ::: . ...::.:::: ::::: ::: : : mFLJ00 AMQQQFQAVVQQQQLQQQQQQQHLIKLHHQSQQQQIQQQQLQRMAQLQLQQQQQQQQQQA 230 240 250 260 270 280 150 160 170 180 190 200 mKIAA1 LQQKTAVVVPQSQAQPATAPQAAAAQEPGQIQAPVRQQPKVQTTPPPTIQGQKVGSLTPP :: . . :. : :: :. : :. .:.. : ..:: :. : :.: :: mFLJ00 LQAQPPMQQPSMQ-QPQPPPSQALPQQLSQLHHPQHHQPPPQAQQSPIAQNQ------PP 290 300 310 320 330 210 220 230 240 250 260 mKIAA1 SSPKTQRAGHRRILSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRTS . : ... . ..:.. .:. : . : :. . : ... . . . .:... mFLJ00 QIPPQSQS--QPLVSQA--QALPGPMLYAAQQQLKFVRAPMVVQQPQVQPQVQQVQPQVQ 340 350 360 370 380 270 280 290 300 310 320 mKIAA1 QQN-VSSASEGSTWNPFDDDNFSKLTAEELLNKDFAKLGEGKLPEKLGGSAE-SLIPGFQ : :..:. .. : . . :.:: .:.. . . . :... . : :: : mFLJ00 PQAAVQAAQSAQMVAPGVQVSQSSLT---MLSSP-SPGQQVQTPQSMPPPPQPSPQPGSQ 390 400 410 420 430 440 330 340 350 360 370 mKIAA1 P----TQGDAFTTPSFSAGTAEKRKGGQAVDSGIPLLSVSDPFIPLQVPDAPEKLI--EG : ..: : . :: . . . . . .. .:: .: ::..: : ... : mFLJ00 PNSNVSSGPAPSPSSFLPSPSPQPSQSPVTARTPQNFSVPSPG-PLNTPVNPSSVMSPAG 450 460 470 480 490 500 380 390 400 410 420 mKIAA1 LKSPDTSLLLPDLLPMT---DPFG---STSDAVID-KADVA-VESLIPGLEPPVAQRLPS .. . . : : .. .:. . : : : :.. ..::. : : ..: : mFLJ00 SSQAEEQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDP-SKRCPL 510 520 530 540 550 560 430 440 450 460 470 480 mKIAA1 QTESVTSNRTDSLTGEDSLLDCSLLSNPTAGLLEEFAPIALSAPTHKAAEDSNLISGFGV .: mFLJ00 KTLQKCEIALEKLKNDMAVPTPPPPPVLPTKQQDLCQPLLDAVLANIRSPVFNHSLYRTF 570 580 590 600 610 620 >>mKIAA0192 ( 1146 res) msp04171 (1146 aa) initn: 881 init1: 260 opt: 286 Z-score: 152.1 bits: 39.0 E(): 0.0025 Smith-Waterman score: 338; 41.081% identity (48.718% ungapped) in 185 aa overlap (14-192:978-1139) 10 20 30 40 mKIAA1 QPKAQATPSQPLQSSQPKQPQAPPTPQQTPATQTQGLPTQAQA : : : :.: .:: . .::. . ... mKIAA0 PTRHLQQRPSGYVHQQAPTYGHGLTSTQRFSHQTLQ-QTPMMGTMTPLS-AQGVQAGVRS 950 960 970 980 990 1000 50 60 70 80 90 100 mKIAA1 T---PQHQQQHLLKQQQQQQQQPQQPTAPPQPAGTFYQQQQQQQQQQAQTQQFQAVHPAA : :..:::. .:::::::: :: ::::::::: : ::.. . mKIAA0 TSILPEQQQQQQQQQQQQQQQQQQQ-------------QQQQQQQQQQQQQQYHIRQQQQ 1010 1020 1030 1040 1050 110 120 130 140 150 160 mKIAA1 QQPVTAQFPVGSQGGAQQQLMQNFYHQQQQQQQQQQQLMAQQAALQQKTAVVVPQSQAQP :: . : : ::: .:. .::::::::::: :: ::..: :: :.:: mKIAA0 QQQMLRQ-----QQQQQQQQQQQQQQQQQQQQQQQQQQPHQQ---QQQAAPPQPQPQSQP 1060 1070 1080 1090 1100 170 180 190 200 210 mKIAA1 ATAPQA-AAAQEPGQIQAPVRQ--QPKVQTTPPPTIQGQKVGSLTPPSSPKTQRAGHRRI :. .:. : : ::: : .: : :. mKIAA0 QFQRQGLQQTQQQQQTAALVRQLQQQLSNTQPQPSTNIFGRY 1110 1120 1130 1140 220 230 240 250 260 270 mKIAA1 LSDVTHSAVFGVPASKSTQLLQAAAAEASLNKSKSATTTPSGSPRTSQQNVSSASEGSTW 543 residues in 1 query sequences 1768474 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:34:48 2006 done: Mon Mar 27 10:34:49 2006 Scan time: 0.730 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]