FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1386.ptfa, 1087 aa vs ./tmplib.26680 library 1767930 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.7599+/-0.00533; mu= 9.9372+/- 0.354 mean_var=178.2017+/-43.094, 0's: 0 Z-trim: 5 B-trim: 18 in 1/35 Lambda= 0.0961 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4199 ( 510 res) mfj24036 ( 510) 295 54 8.9e-08 mKIAA0708 ( 2228 res) mbg06040 (2228) 276 52 1.4e-06 mFLJ00040 ( 638 res) mpm09196 ( 638) 181 38 0.0059 >>mKIAA4199 ( 510 res) mfj24036 (510 aa) initn: 447 init1: 208 opt: 295 Z-score: 232.0 bits: 53.6 E(): 8.9e-08 Smith-Waterman score: 724; 26.715% identity (32.104% ungapped) in 554 aa overlap (177-728:42-504) 150 160 170 180 190 200 mKIAA1 KKNTPLHYAAASGMKACVELLVKHGGDLFAENENRDTPCDCAEKQQHKDLALSLESQMVF :.:... : : . . .: ..:.: . mKIAA4 ATLLDVKMSVDMNSQGSDSNEEDYDPNCEEEEEEEEDPGDIED--YYVGVASDVEQQGAD 20 30 40 50 60 210 220 230 240 250 260 mKIAA1 SRDPEAEEIEAEYAALDKREPYEGLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHD . ::: : ... : .: :: . . : :..:.. .:. .: mKIAA4 AFDPE----EYQFTCLTYKES-EGALHEHMTSL--------ASVLKVSHSVAKLILVNFH 70 80 90 100 110 270 280 290 300 310 320 mKIAA1 WDREKLLEAWMSNPENCCQRSGVQMPTPPPSGYNAWDTLPSPRTPRTTRSSVTSPDEISL :. ..:. . :: . .. :: : :: . .:. . :. mKIAA4 WQVSEILDRYRSNSAQLLVEARVQ---PNPSKH-----VPTAHPPHH------------- 120 130 140 150 330 340 350 360 370 380 mKIAA1 SPGDLDTSLCDICMCSISVFEDPVDMPCGHDFCRGCWEAFLNLKIQEGEAHNIFCPAYEC : .:: . :. ... : :.:::.::: .. ...: . .: : : .: mKIAA4 ---------CAVCMQFVRK-ENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDC 160 170 180 190 200 390 400 410 420 430 440 mKIAA1 FQLVPVDVIESVV-SKEMDKRYLQFDIKAFVENNPAIKWCPTAGCERAVRLTKQGSNPSG .: : . .. ..:. .: .. .. .::.. .. :: : : ..:. . : mKIAA4 PLRTPEDFVFPLLPNEELRDKYRRYLFRDYVESHFQLQLCPGADCPMVIRVQE----P-- 210 220 230 240 250 450 460 470 480 490 500 mKIAA1 SDTLSFPLLRAPAVDCGK-GHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSE :: :.:.. ...::..: : : :: : ..:: : .. mKIAA4 ---------RARRVQCNRCSEVFCFKCRQMYHAPTDCATIRKWLTKCAD----------- 260 270 280 290 510 520 530 540 550 560 mKIAA1 AYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEWKKHSSSTGG :. . .. ...: : .:. :.:: :::::::.:::.::::.:: .:: :.: mKIAA4 ---DSETANYISAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSE--- 300 310 320 330 340 350 570 580 590 600 610 620 mKIAA1 YYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRYKNHEHSYQLEQRLLKT ::.:.::. . .::.. :. . . : ... :. :..::..: ::: . . mKIAA4 YYECSRYKENPDIVNQSQQ----AQAR----EALKKYLFYFERWENHNKSLQLEAQTYER 360 370 380 390 400 630 640 650 660 670 680 mKIAA1 AKEKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFE .::... :.... : : ....:...: : : :. .:::....: .. .:..:: mKIAA4 IHEKIQE--RVMNNL-GTWIDWQYLQNAAKLLAKCRYTLQYTYPYAYYME-SGPRKKLFE 410 420 430 440 450 460 690 700 710 720 730 740 mKIAA1 LMQTDLEMVTEDLAQKVNRPYLRTPRHKIIRAACLVQQKRQEFLASVARGVAPADSPDAP .:..:: :.:. ::.: : . ...:.:. .: mKIAA4 YQQAQLEAEIENLSWKVERAD-SYDRGDLENQMHIAEQRRRTLLKDFHDT 470 480 490 500 510 750 760 770 780 790 800 mKIAA1 RRSFAGGTWDWEYLGFASPEYRRRHRQQRRRGDVHSLLSNPTDLDEPSESTFDLPEGSSG >>mKIAA0708 ( 2228 res) mbg06040 (2228 aa) initn: 295 init1: 212 opt: 276 Z-score: 210.3 bits: 51.7 E(): 1.4e-06 Smith-Waterman score: 528; 24.510% identity (29.762% ungapped) in 714 aa overlap (34-719:1492-2107) 10 20 30 40 50 60 mKIAA1 GNTTTKFRKALINGDENLACQIYENNPQLKESLDPNISYGEPYQHNTPLHYAARHGMNRI :.: : . . :.. : .. .: . mKIAA0 DIGPHRRLQWTWLGRAELQLGFNQSEEVSVETLLRNSDLSPELLHQALLPLTSDNGPLTL 1470 1480 1490 1500 1510 1520 70 80 90 100 110 120 mKIAA1 LGTFLFGRDGNPNKRNVHNETSMHLL-CMGPQIMISEGTLHPRLARPVEDDFRRADCLQM : . . : :. ...: ..: . :: ..: .. .: .:. .:: . mKIAA0 EETQDYPQGGVLRLREPRSQTHEEFLWLIPPQTYLS---VEKDEGRTLEQKRNLLSCLLV 1530 1540 1550 1560 1570 130 140 150 160 170 mKIAA1 -ILQW---KGAKLDQGEYERAAIDAVDNKKNTP--LHYAAASGMKAC--VELL--VKH-- ::. :: ..:: ...: .. . : : ::: :. :: ...: . : mKIAA0 RILKAHREKGLHIDQ--LVCLVLEAWQKGPDPPGRLGNAAAVGV-ACSSTDVLSCILHLL 1580 1590 1600 1610 1620 1630 180 190 200 210 220 mKIAA1 GGDLFAENENRD------TPCDCAEKQQHKDLALSLESQMVFSRDPEAEEIEAEYAALDK : . ..: :: . . . :. . ... :: : : . : :.: . mKIAA0 GQGYVERRDDRPQVLMYATPEPMGPCRGQADVPFCGNKNTETSR-PSPEAVVA-LASL-Q 1640 1650 1660 1670 1680 1690 230 240 250 260 270 280 mKIAA1 REPYEGLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHDWDREKLLEAWMSNPENCC . . ::... : .. . .. . :. .:. :: : :.::... ..:: mKIAA0 LPAGRTMSPQEVEGLMEQTVRQVQETLNLEPDVAQHLLAHSHWGTEQLLQSYSDDPEPLL 1700 1710 1720 1730 1740 1750 290 300 310 320 330 340 mKIAA1 QRSGVQMPTPPPSGYNAWDTLPSPRTPRTTRSSVTSPDEISLSPGDLDTSLCDICMCSIS .:...: ...: : ::. : .:. .. mKIAA0 LAAGLRVPQA--------QVVP------------TRPDQ------------CPVCVTPLG 1760 1770 1780 350 360 370 380 390 400 mKIAA1 VFEDPVDMPCGHDFCRGCWEAFLNLKIQEGEAHNIFCPAYECFQLVPVDVIESVVSK-EM .: .. : : :..::. .:. .:... . : :: .: :...::. :. mKIAA0 PHDDSPSLCCLHCCCKSCWNEYLTTRIEQNFVLNCTCPIADCPAQPTGAFIRNIVSSPEV 1790 1800 1810 1820 1830 1840 410 420 430 440 450 460 mKIAA1 DKRYLQFDIKAFVENNPAIKWCPTA-GCERAVRLTKQGSNPSGSDTLSFPLLRAPAVDCG ..: . ....::. . :: . ::.: : .:: :: : :. mKIAA0 ISKYEKALLRGYVESCSNLTWCTNPQGCDRI--LCRQGL---GSGTT-----------CS 1850 1860 1870 1880 470 480 490 500 510 520 mKIAA1 K-GHLFCWEC-LGEAHEPCDCQTWKNWLQKITEMKPEELVGVSEAYEDAANCLWLLTNSK : : :. : . ::: : .: ..:.. . :.: : .. : : :: mKIAA0 KCGWASCFSCSFPEAHYPASCGHMSQWVDDGGYYD-----GMS--VEAQSKHLAKLI-SK 1890 1900 1910 1920 1930 530 540 550 560 570 580 mKIAA1 PCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEWKKHSSSTGGYYRCTRYEVIQHVEEQ : .:..::.::::: :: ::.:.. ::: ::. :: : :: :. mKIAA0 RCPSCQAPIEKNEGCLHMTCARCNHGFCWRCLKSWKP---SHKDYYNCS----------- 1940 1950 1960 1970 1980 590 600 610 620 630 640 mKIAA1 SKEMTVEAEKKHKRFQELDRFMHYYTRYKNHEHSYQLEQRLLKTAKEKMEQLSRALKETE :. .: ...::::. : : :... .. : . :. :..:. mKIAA0 --AMVSKAARQEKRFQD------YNERCTFHHQAREFAVNLRNQAS--------AIQEVP 1990 2000 2010 2020 650 660 670 680 690 mKIAA1 GGCPDT-TFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFELMQTDLEMVTEDLAQ : . ::..:: ..: ..:..: . :.:. . . .. : . .::. :. : mKIAA0 P--PKSFTFLQDACRALEQARKVLAYACVYSFYSQD-TEYMDVVEQQTENLELHTNALQI 2030 2040 2050 2060 2070 2080 700 710 720 730 740 750 mKIAA1 KVNRPYLR----TPRHKIIRAACLVQQKRQEFLASVARGVAPADSPDAPRRSFAGGTWDW ... :: . ...:: :: mKIAA0 LLEETLLRCRDLASSLRFLRADCLSTGTELLRRIQERLLAILQHSTQDFRVGLQSPSVET 2090 2100 2110 2120 2130 2140 >>mFLJ00040 ( 638 res) mpm09196 (638 aa) initn: 229 init1: 98 opt: 181 Z-score: 145.4 bits: 37.9 E(): 0.0059 Smith-Waterman score: 182; 24.510% identity (28.902% ungapped) in 204 aa overlap (37-223:80-269) 10 20 30 40 50 60 mKIAA1 TTKFRKALINGDENLACQIYENNPQLKESLDPNI--SYGEPYQHNTPLHYAARHGMNRIL ::.. ... . .:::: :: :. .. mFLJ00 DDQDKDAMQKMCHPLCSCEDCEKLISGRLNDPSVVTPFSRDDRGQTPLHVAALCGQASLI 50 60 70 80 90 100 70 80 90 100 110 mKIAA1 GTFLFGRDGNPNKRNVHNETSMHLLCMGPQIMISEGTLHPRLARPVEDD----------- :: .. . : . :. : .:: :. .. :: . . :.:. mFLJ00 D-FLVSKGAVVNATDYHGSTPLHLACQKGFQSVTLLLLHYKASTEVQDNNGNTPLHLACT 110 120 130 140 150 160 120 130 140 150 160 170 mKIAA1 FRRADCLQMILQW--KGAKLDQGEYERAAIDAVDNKKNTPLHYAAASGMKACVELLVKHG . . ::.. .. . .. .:: : ..: .: :: :: :... .: :...: mFLJ00 YGQEDCVKALVYYDVQACRLDIG----------NEKGDTALHIAARWGYEGIIETLLQNG 170 180 190 200 210 180 190 200 210 220 mKIAA1 GDLFAENENRDTPCDCAEKQQHKDLALS-LESQMVFS-RDPEAEEIEAEYAALDKREPYE . ..:. ..:: :: ... . :: .:.. . : : :. : . :. : mFLJ00 APTAVQNRLKETPLKCALNSK---VILSIMEAHHLSSDRRPRPSEEKLLRAVADGDLEMV 220 230 240 250 260 270 230 240 250 260 270 280 mKIAA1 GLRPQDLRRLKDMLIVETADMLQAPLFTAEALLRAHDWDREKLLEAWMSNPENCCQRSGV mFLJ00 RYLLEWTEDDLDDVEDAISTVDLEFCHPLCQCPKCAPAQKLARISANGLSVNVTNQDGFS 280 290 300 310 320 330 1087 residues in 1 query sequences 1767930 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:43:10 2006 done: Mon Mar 27 10:43:11 2006 Scan time: 1.080 Display time: 0.160 Function used was FASTA [version 3.4t11 Apr 17, 2002]