FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0401.ptfa, 179 aa
 vs ./tmplib.26680 library

1768838 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.7455+/-0.00428; mu= 11.4417+/- 0.287
 mean_var=79.4492+/-18.260, 0's: 0 Z-trim: 2  B-trim: 30 in 1/35
 Lambda= 0.1439

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1546  ( 614 res)   mbg15812                   ( 614)  496  112 5.1e-26
mKIAA1676  ( 1373 res)   mpm11077                  (1373)  338   79 6.6e-16


>>mKIAA1546  ( 614 res)   mbg15812                        (614 aa)
 initn: 485 init1: 377 opt: 496  Z-score: 559.4  bits: 111.8 E(): 5.1e-26
Smith-Waterman score: 496;  49.425% identity (51.190% ungapped) in 174 aa overlap (7-179:446-614)

                                       10        20         30     
mKIAA0                         PSKGVVKEEKSGPTVEEEEE-ELWSDSEHNFLDENI
                                     . : ::  .   .: : :::::::: :  :
mKIAA1 LSRVLPGFNHDRTASAQELLYSLTGSSQEKQPEVSGQDAAAVQEIEYWSDSEHNFQDPCI
         420       430       440       450       460       470     

          40        50        60        70        80        90     
mKIAA0 GGVAVAPAHCSILIECARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHGLALWEA
       ::::.::.: :::::::. :.:::: .. :.: ::::::::.:.::::  :.: ::::::
mKIAA1 GGVAIAPTHGSILIECAKCEVHATTKVNDPDRNHPTRISLVLYRHKNLFLPKHCLALWEA
         480       490       500       510       520       530     

         100       110       120       130       140       150     
mKIAA0 KMKQLAERARQRQEEAARLGLGQQEAKLYGKKRKWGGAMVAEPQHKEKKGAIPTRQALAM
       ::   ::.:: ..:: .. :  .   : .::..:   .   ::.. .   ..    . ..
mKIAA1 KM---AEKAR-KEEECGKNGSDHVSQKNHGKQEKREPTGPQEPSYLRFIQSLAENTG-SV
            540        550       560       570       580        590

         160       170         
mKIAA0 PTDSAVTVSSYAYTKVTGPYSRWI
        :::.::.: ::.:.:::::. ..
mKIAA1 TTDSTVTTSPYAFTQVTGPYNTFV
              600       610    

>>mKIAA1676  ( 1373 res)   mpm11077                       (1373 aa)
 initn: 329 init1: 329 opt: 338  Z-score: 377.9  bits: 79.4 E(): 6.6e-16
Smith-Waterman score: 338;  61.039% identity (61.039% ungapped) in 77 aa overlap (20-96:1297-1373)

                          10        20        30        40         
mKIAA0            PSKGVVKEEKSGPTVEEEEEELWSDSEHNFLDENIGGVAVAPAHCSILI
                                     .:.:::::. . : ..::::.:: : :.::
mKIAA1 QKLASCQVEDERHPEADEPQHPEDDNLPQLDEFWSDSEEIYADPSFGGVAIAPIHGSVLI
       1270      1280      1290      1300      1310      1320      

      50        60        70        80        90       100         
mKIAA0 ECARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHGLALWEAKMKQLAERARQRQE
       ::::.:::::: :..:.:  : :.::::::::.::.::::. . . :             
mKIAA1 ECARKELHATTSLRSPKRGVPFRVSLVFYQHKSLNKPNHGFDINKIK             
       1330      1340      1350      1360      1370                

     110       120       130       140       150       160         
mKIAA0 EAARLGLGQQEAKLYGKKRKWGGAMVAEPQHKEKKGAIPTRQALAMPTDSAVTVSSYAYT




179 residues in 1 query   sequences
1768838 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:19:54 2006 done: Mon Mar 27 10:19:55 2006
 Scan time:  0.390 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]