FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1081.ptfa, 403 aa
 vs ./tmplib.26680 library

1768614 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.3543+/-0.00689; mu= -9.4267+/- 0.452
 mean_var=376.9604+/-91.706, 0's: 0 Z-trim: 9  B-trim: 23 in 1/35
 Lambda= 0.0661

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0378  ( 632 res)   mbg02680                   ( 632) 1282  136 5.8e-33


>>mKIAA0378  ( 632 res)   mbg02680                        (632 aa)
 initn: 1349 init1: 1049 opt: 1282  Z-score: 684.1  bits: 136.1 E(): 5.8e-33
Smith-Waterman score: 1359;  72.575% identity (75.874% ungapped) in 299 aa overlap (1-286:334-632)

                                             10        20        30
mKIAA1                               KKDSRLKTLEIALEQKKEECLKMESQLKKA
                                     :.::.::.::::.::::::: :.:.:::::
mKIAA0 VNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKA
           310       320       330       340       350       360   

               40        50        60        70        80        90
mKIAA1 HEATLEARASPEMSDRIQQLEREISRYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA
       :.   ..: .::..::..::..: : :.:: .:::.::::::::::::::::::::::::
mKIAA0 HNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIA
           370       380       390       400       410       420   

              100       110       120       130       140       150
mKIAA1 ELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQVEELLMA
       :::::: :..:::::::::::...:.::::.::.:::.::::::. :.::.::.:::. :
mKIAA0 ELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNA
           430       440       450       460       470       480   

              160       170       180       190       200       210
mKIAA1 MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDA
       .::..:::.. ::.:.::::::::::.::.::: ::::.:::.:::::::::::::::::
mKIAA0 LEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDA
           490       500       510       520       530       540   

              220        230       240       250       260         
mKIAA1 NIALLELSSSKKK-TQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHF-------
       ::::::::.:::: ::::: ::::::::::.:::::::::::::::::..::        
mKIAA0 NIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADNYDEDHHHYHHHHH
           550       560       570       580       590       600   

                 270       280       290       300       310       
mKIAA1 ----RS-SRSNQTNHKPSPDQDEEEGIWALSSAILFRTIIQPLLELDQNRSKLKLYIGHL
           :: .::...::.::::::.::::::                               
mKIAA0 HHHHRSPGRSQHSNHRPSPDQDDEEGIWA                               
           610       620       630                                 




403 residues in 1 query   sequences
1768614 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:35:37 2006 done: Mon Mar 27 10:35:38 2006
 Scan time:  0.640 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]