FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0374.ptfa, 605 aa
 vs ./tmplib.26680 library

1768412 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.5517+/-0.00652; mu= 5.4404+/- 0.436
 mean_var=208.5062+/-48.194, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0888

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1472  ( 749 res)   mid07019                   ( 749)  927  131 2.9e-31


>>mKIAA1472  ( 749 res)   mid07019                        (749 aa)
 initn: 1160 init1: 825 opt: 927  Z-score: 653.6  bits: 131.3 E(): 2.9e-31
Smith-Waterman score: 1199;  41.250% identity (45.383% ungapped) in 560 aa overlap (46-586:215-742)

          20        30        40        50        60        70     
mKIAA0 GGSPNHGSLRRLLITARRLLQRLQRRCAKRRGSRASRPDCGGRVDPAPGTPPIPPLTRTR
                                     ...: ..   :: . :. .   .   . : 
mKIAA1 GHSPIGFCPGSDEDFTRKKCRIGMVGEGSIQSARHKKEPKGGIIKPG-SEADFSSSSSTG
          190       200       210       220       230        240   

              80        90       100       110       120       130 
mKIAA0 SLMA----MSLQGSRRASAGSRSGGTLGRSGLAVFAQCPQVPASQNEQRPLLPASRRTSP
       :. :    ::  :..:::  ::. :  :::. :   .  . : :  :.  .    :    
mKIAA1 SISAPEVHMSTTGNKRASF-SRNRGPHGRSNGASSHKSGSSPPSPREKDLVSMLCRNPLS
           250       260        270       280       290       300  

             140       150       160       170       180       190 
mKIAA0 PVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQ
       : ... .:. ::  ::::::: :::: ::. ::: .:  :..:::.:::.::::::::::
mKIAA1 PSNIHPSYAPSS-PSSSNSGSYKGSDCSPVMRRSGRYMSCGENHGVKPPNPEQYLTPLQQ
            310        320       330       340       350       360 

             200       210       220       230       240       250 
mKIAA0 KEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKE
       ::: .:::...::... ::..:..:: .::.::.::.:::::::::::::::::::::::
mKIAA1 KEVTVRHLRTKLKESERRLHERESEIMELKSQLARMREDWIEEECHRVEAQLALKEARKE
             370       380       390       400       410       420 

             260       270       280       290       300       310 
mKIAA0 IRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGVAKEEGTGESA
       :.::::::.:....: :::::.:::::::::::::::.::.:::.:.:.  ..:   . .
mKIAA1 IKQLKQVIETMRSSLADKDKGIQKYFVDINIQNKKLESLLQSMEMAHNSSLRDELCLDFS
             430       440       450       460       470       480 

             320       330       340       350       360       370 
mKIAA0 GGSPARSLTRSSTYTKLSDPAVCGDRQPGDPSNTSAEDGADSGYVAADDTLSRTDALEAS
         :: .::  :::. :: : ..  ..:        .:.::::  ...:.    :: :.  
mKIAA1 FDSPEKSLPLSSTFDKLPD-GLSLEEQI-------TEEGADSELLVGDSMAEGTDLLDEM
             490       500               510       520       530   

             380       390       400        410       420       430
mKIAA0 SLLSSGVDCGLEEASLHSSFNLGPRFPASNTYEKL-LCGMEAGVQVSCMQERAIQTDFVQ
          ..  . :::   .::.       :. .. . : : . : :. :   .:.:.::: : 
mKIAA1 VTATTTESSGLEF--VHST-------PGPQALKALPLVSHEEGIAV---MEQAVQTDVVP
           540         550              560       570          580 

              440         450       460                   470      
mKIAA0 YQPDLNTILEKVGQAQ-VCG-SVLKDRHSELDPHPS------------GPRDPDSAVVVT
       ..: .. ....: . :  :  :  .  .:  :   :             ::.:.::....
mKIAA1 FSPAISELIQSVLKLQDYCPTSSASPDESGADSMESFSESISALMLDLTPRSPNSAILLS
             590       600       610       620       630       640 

        480       490       500       510       520       530      
mKIAA0 VGDELEAPEPITCGPATHRPAVNSNPGLPVSVVCPVEEEEEEAAAATTTEKEPKSYWSRH
           .: :  .. :       ...:  .         ::. ... . .  .  ..::: .
mKIAA1 ---PVEIP--FSKGAME----AHANRLMRELDFAAYTEERLDSVLSLSQGSVVRQYWSSN
                  650           660       670       680       690  

        540       550       560       570       580       590      
mKIAA0 YIVDLLAVVVPAVPTVAWLCRSQRRQGQPIYNISSLLRGCCTVALHSIRRISCRSLGQPS
       ..::::::..:.:::: :   .::   .:.:::..::::::.:::::.::          
mKIAA1 FLVDLLAVAAPVVPTVLWAFSTQRGGTDPVYNIGALLRGCCVVALHSLRRTAFHMKT   
            700       710       720       730       740            

        600     
mKIAA0 SSTAGGSQL




605 residues in 1 query   sequences
1768412 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:19:10 2006 done: Mon Mar 27 10:19:11 2006
 Scan time:  0.790 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]