# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg06933.fasta.nr -Q ../query/mKIAA1100.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA1100, 384 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7902978 sequences
Expectation_n fit: rho(ln(x))= 6.2870+/-0.000203; mu= 6.0137+/- 0.011
mean_var=125.7811+/-23.854, 0's: 41 Z-trim: 105 B-trim: 57 in 1/65
Lambda= 0.114358
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|123784632|sp|Q3UHJ8.1|RNF44_MOUSE RecName: Full ( 407) 2678 452.7 6.6e-125
gi|74179060|dbj|BAE42740.1| unnamed protein produc ( 351) 2527 427.7 1.9e-117
gi|73953315|ref|XP_546217.2| PREDICTED: similar to ( 431) 2526 427.6 2.4e-117
gi|149726055|ref|XP_001502682.1| PREDICTED: simila ( 432) 2521 426.8 4.3e-117
gi|74213634|dbj|BAE35621.1| unnamed protein produc ( 350) 2508 424.6 1.6e-116
gi|74758994|sp|Q7L0R7.1|RNF44_HUMAN RecName: Full= ( 432) 2507 424.5 2.1e-116
gi|109079877|ref|XP_001091221.1| PREDICTED: simila ( 983) 2499 423.5 9.7e-116
gi|114603535|ref|XP_001136577.1| PREDICTED: ring f ( 430) 2490 421.7 1.5e-115
gi|81908627|sp|Q4V7B8.1|RNF44_RAT RecName: Full=RI ( 350) 2482 420.3 3.2e-115
gi|194668435|ref|XP_610473.4| PREDICTED: similar t ( 432) 2463 417.2 3.3e-114
gi|17160934|gb|AAH17630.1| Ring finger protein 44 ( 339) 2429 411.5 1.3e-112
gi|52545897|emb|CAD39147.2| hypothetical protein [ ( 354) 2423 410.6 2.8e-112
gi|194379472|dbj|BAG63702.1| unnamed protein produ ( 351) 2401 406.9 3.4e-111
gi|73953313|ref|XP_865983.1| PREDICTED: similar to ( 351) 2399 406.6 4.3e-111
gi|114603537|ref|XP_530875.2| PREDICTED: ring fing ( 350) 2384 404.1 2.4e-110
gi|224067536|ref|XP_002197442.1| PREDICTED: simila ( 442) 2233 379.3 8.8e-103
gi|47211404|emb|CAF94220.1| unnamed protein produc ( 428) 1957 333.8 4.4e-89
gi|123908298|sp|Q08CG8.1|RNF44_DANRE RecName: Full ( 448) 1923 328.2 2.2e-87
gi|114624653|ref|XP_528602.2| PREDICTED: ring fing ( 589) 1747 299.2 1.5e-78
gi|73971357|ref|XP_866858.1| PREDICTED: similar to ( 432) 1745 298.8 1.5e-78
gi|73971371|ref|XP_866934.1| PREDICTED: similar to ( 462) 1745 298.8 1.6e-78
gi|57093703|ref|XP_531997.1| PREDICTED: similar to ( 512) 1745 298.9 1.7e-78
gi|73971359|ref|XP_866867.1| PREDICTED: similar to ( 514) 1745 298.9 1.7e-78
gi|21666412|gb|AAM73697.1|AF394047_1 RING finger p ( 432) 1742 298.3 2.1e-78
gi|55663446|emb|CAH70194.1| ring finger protein 38 ( 439) 1742 298.3 2.1e-78
gi|54673576|gb|AAH33786.2| Ring finger protein 38 ( 465) 1742 298.3 2.2e-78
gi|56749664|sp|Q9H0F5.4|RNF38_HUMAN RecName: Full= ( 515) 1742 298.4 2.4e-78
gi|109110995|ref|XP_001082059.1| PREDICTED: simila ( 612) 1742 298.4 2.7e-78
gi|149739190|ref|XP_001504372.1| PREDICTED: ring f ( 467) 1740 298.0 2.8e-78
gi|149739188|ref|XP_001504371.1| PREDICTED: ring f ( 517) 1740 298.0 3e-78
gi|74355024|gb|AAI02725.1| Ring finger protein 38 ( 432) 1736 297.3 4.2e-78
gi|50949355|emb|CAB66751.3| hypothetical protein [ ( 515) 1737 297.5 4.2e-78
gi|89272082|emb|CAJ81331.1| ring finger protein 38 ( 432) 1735 297.1 4.7e-78
gi|71896429|ref|NP_001025505.1| ring finger protei ( 464) 1735 297.2 5e-78
gi|193787520|dbj|BAG52726.1| unnamed protein produ ( 439) 1733 296.8 6e-78
gi|126334064|ref|XP_001371090.1| PREDICTED: simila ( 520) 1733 296.9 6.8e-78
gi|74188535|dbj|BAE28022.1| unnamed protein produc ( 432) 1731 296.5 7.4e-78
gi|38173739|gb|AAH60730.1| Ring finger protein 38 ( 464) 1731 296.5 7.8e-78
gi|148670480|gb|EDL02427.1| ring finger protein 38 ( 465) 1731 296.5 7.8e-78
gi|56749656|sp|Q8BI21.1|RNF38_MOUSE RecName: Full= ( 518) 1731 296.5 8.5e-78
gi|53733396|gb|AAH83548.1| Rnf38 protein [Rattus n ( 432) 1728 296.0 1e-77
gi|19423292|gb|AAL88459.1|AF480444_1 RING finger p ( 432) 1720 294.7 2.6e-77
gi|120577569|gb|AAI30125.1| LOC100037019 protein [ ( 496) 1701 291.6 2.5e-76
gi|169641968|gb|AAI60676.1| Unknown (protein for I ( 508) 1701 291.6 2.6e-76
gi|118104283|ref|XP_424864.2| PREDICTED: similar t ( 546) 1683 288.6 2.1e-75
gi|10437428|dbj|BAB15050.1| unnamed protein produc ( 332) 1651 283.2 5.8e-74
gi|73971367|ref|XP_866906.1| PREDICTED: similar to ( 517) 1653 283.7 6.3e-74
gi|149568981|ref|XP_001517302.1| PREDICTED: simila ( 460) 1649 283.0 9.2e-74
gi|224088434|ref|XP_002186805.1| PREDICTED: simila ( 475) 1602 275.2 2e-71
gi|189514564|ref|XP_695200.3| PREDICTED: unc-45 ho ( 779) 1353 234.3 6.7e-59
>>gi|123784632|sp|Q3UHJ8.1|RNF44_MOUSE RecName: Full=RIN (407 aa)
initn: 2678 init1: 2678 opt: 2678 Z-score: 2398.8 bits: 452.7 E(): 6.6e-125
Smith-Waterman score: 2678; 99.204% identity (99.469% similar) in 377 aa overlap (8-384:31-407)
10 20 30
mKIAA1 QQSRPALGKLLPRPSNLSVEEHRASAPAGRSPRMLHP
:.: :::::::::::::::::::::::::
gi|123 MRPWTLAVTKWPPSAPVGHWRVSTRLSSSPGQLWGRPSNLSVEEHRASAPAGRSPRMLHP
10 20 30 40 50 60
40 50 60 70 80 90
mKIAA1 ATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|123 ATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQ
70 80 90 100 110 120
100 110 120 130 140 150
mKIAA1 HYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|123 HYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFV
130 140 150 160 170 180
160 170 180 190 200 210
mKIAA1 SLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|123 SLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHDPLHQELS
190 200 210 220 230 240
220 230 240 250 260 270
mKIAA1 FGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|123 FGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISL
250 260 270 280 290 300
280 290 300 310 320 330
mKIAA1 DLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|123 DLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFS
310 320 330 340 350 360
340 350 360 370 380
mKIAA1 DFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
:::::::::::::::::::::::::::::::::::::::::::::::
gi|123 DFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
370 380 390 400
>>gi|74179060|dbj|BAE42740.1| unnamed protein product [M (351 aa)
initn: 2527 init1: 2527 opt: 2527 Z-score: 2265.0 bits: 427.7 E(): 1.9e-117
Smith-Waterman score: 2527; 100.000% identity (100.000% similar) in 351 aa overlap (34-384:1-351)
10 20 30 40 50 60
mKIAA1 RPALGKLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTV
::::::::::::::::::::::::::::::
gi|741 MLHPATQQSPFMVDLHEQVHQGPVPLSYTV
10 20 30
70 80 90 100 110 120
mKIAA1 TTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 TTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYH
40 50 60 70 80 90
130 140 150 160 170 180
mKIAA1 TYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 TYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHP
100 110 120 130 140 150
190 200 210 220 230 240
mKIAA1 LGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 LGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPP
160 170 180 190 200 210
250 260 270 280 290 300
mKIAA1 PPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 PPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAK
220 230 240 250 260 270
310 320 330 340 350 360
mKIAA1 PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|741 PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL
280 290 300 310 320 330
370 380
mKIAA1 KANRTCPICRADASEVPREAE
:::::::::::::::::::::
gi|741 KANRTCPICRADASEVPREAE
340 350
>>gi|73953315|ref|XP_546217.2| PREDICTED: similar to rin (431 aa)
initn: 1493 init1: 1493 opt: 2526 Z-score: 2262.9 bits: 427.6 E(): 2.4e-117
Smith-Waterman score: 2526; 92.468% identity (96.364% similar) in 385 aa overlap (1-384:49-431)
10 20 30
mKIAA1 QQSRPALGKLLPRPSNLSVEEHRASAPAGR
:. : . :::: .: ::::::::::::
gi|739 QRRFSVGPGSTPGQLRGSPSREGPLASLPAQDERLPSQQPLPRP-HLPVEEHRASAPAGR
20 30 40 50 60 70
40 50 60 70 80 90
mKIAA1 SPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPAC
::::::::.::::::::::::::::::::::::::::::::::::.::::::::::::::
gi|739 SPRMLHPASQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQLPAC
80 90 100 110 120 130
100 110 120 130 140 150
mKIAA1 SVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHM
::::::::::::::::: ::::::::::: ::..::::::::::::::::::: :::.::
gi|739 SVMFSGQHYPLCCLPPP-LIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPHPQPAHM
140 150 160 170 180 190
160 170 180 190 200 210
mKIAA1 APLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHD
::::::::::.::::::::::::..:::::::::::::::::: ::::::::::::::::
gi|739 APLGQFVSLQAQHPRMPLQRLDNDVDLRGDQHPLGSFTYSTSAPGPALSPSVPLHYLPHD
200 210 220 230 240 250
220 230 240 250 260
mKIAA1 PLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPS-YYPSFLPYFLSMLPMSPT
:::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
gi|739 PLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMSPT
260 270 280 290 300 310
270 280 290 300 310 320
mKIAA1 TVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQ
..::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|739 AMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQ
320 330 340 350 360 370
330 340 350 360 370 380
mKIAA1 TLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
:::::::::::.::::::::::::::.::::::::::::::::::::::::::::
gi|739 TLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
380 390 400 410 420 430
>>gi|149726055|ref|XP_001502682.1| PREDICTED: similar to (432 aa)
initn: 1513 init1: 1513 opt: 2521 Z-score: 2258.5 bits: 426.8 E(): 4.3e-117
Smith-Waterman score: 2521; 91.948% identity (96.104% similar) in 385 aa overlap (1-384:49-432)
10 20 30
mKIAA1 QQSRPALGKLLPRPSNLSVEEHRASAPAGR
:. : . :::: .: :::.:::::::
gi|149 QWRFSAGASSTPGQLRGSPGREGPLAGPPAQDERLPSQQPLPRPPHLPVEERRASAPAGG
20 30 40 50 60 70
40 50 60 70 80 90
mKIAA1 SPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPAC
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 SPRMLHPASQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPAC
80 90 100 110 120 130
100 110 120 130 140 150
mKIAA1 SVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHM
::::::::::::::::: ::::::::::: ::..::::::::::.:::::::: :::.::
gi|149 SVMFSGQHYPLCCLPPP-LIQACTMQQLPVPYQAYPHLISSDHYVLHPPPPAPHPQPAHM
140 150 160 170 180 190
160 170 180 190 200 210
mKIAA1 APLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHD
:::::::::::::::::::::::..:::::::::::::::::: ::::::::::::::::
gi|149 APLGQFVSLQTQHPRMPLQRLDNDVDLRGDQHPLGSFTYSTSAPGPALSPSVPLHYLPHD
200 210 220 230 240 250
220 230 240 250 260
mKIAA1 PLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPS-YYPSFLPYFLSMLPMSPT
:::::::::.::::::::::.::::::::::::::::::: ::::::::::::::::::
gi|149 PLHQELSFGMPYSHMMPRRLGTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMSPT
260 270 280 290 300 310
270 280 290 300 310 320
mKIAA1 TVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQ
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 AVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQ
320 330 340 350 360 370
330 340 350 360 370 380
mKIAA1 TLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
:::::::::::.::::::::::::::.::::::::::::::::::::::::::::
gi|149 TLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
380 390 400 410 420 430
>>gi|74213634|dbj|BAE35621.1| unnamed protein product [M (350 aa)
initn: 1997 init1: 1997 opt: 2508 Z-score: 2248.0 bits: 424.6 E(): 1.6e-116
Smith-Waterman score: 2508; 99.715% identity (99.715% similar) in 351 aa overlap (34-384:1-350)
10 20 30 40 50 60
mKIAA1 RPALGKLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTV
::::::::::::::::::::::::::::::
gi|742 MLHPATQQSPFMVDLHEQVHQGPVPLSYTV
10 20 30
70 80 90 100 110 120
mKIAA1 TTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYH
:::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
gi|742 TTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPP-LIQACTMQQLPGPYH
40 50 60 70 80
130 140 150 160 170 180
mKIAA1 TYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|742 TYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHP
90 100 110 120 130 140
190 200 210 220 230 240
mKIAA1 LGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|742 LGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPP
150 160 170 180 190 200
250 260 270 280 290 300
mKIAA1 PPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|742 PPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAK
210 220 230 240 250 260
310 320 330 340 350 360
mKIAA1 PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|742 PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL
270 280 290 300 310 320
370 380
mKIAA1 KANRTCPICRADASEVPREAE
:::::::::::::::::::::
gi|742 KANRTCPICRADASEVPREAE
330 340 350
>>gi|74758994|sp|Q7L0R7.1|RNF44_HUMAN RecName: Full=RING (432 aa)
initn: 1503 init1: 1503 opt: 2507 Z-score: 2246.0 bits: 424.5 E(): 2.1e-116
Smith-Waterman score: 2507; 91.774% identity (94.859% similar) in 389 aa overlap (3-384:45-432)
10 20
mKIAA1 QQSRPALGKLLP------RPSNLSVEEHRASA
: :: . :: :: .: :::.::::
gi|747 APVGQRRFSAGPGSTPGQLWGSPGLEGPLASPPARDERLPSQQPPSRPPHLPVEERRASA
20 30 40 50 60 70
30 40 50 60 70 80
mKIAA1 PAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQ
::: :::::::::::::::::::::::::::::::::::::::::::::.::::::::::
gi|747 PAGGSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQ
80 90 100 110 120 130
90 100 110 120 130 140
mKIAA1 LPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQ
::::::::::::::::::::: ::::::::::: ::..::::::::::::::::::::::
gi|747 LPACSVMFSGQHYPLCCLPPP-LIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPPPQ
140 150 160 170 180 190
150 160 170 180 190 200
mKIAA1 PTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHY
:::::::::::::::::::::::::::..:::::: :::::::::: ::::::::::::
gi|747 PTHMAPLGQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSAPGPALSPSVPLHY
200 210 220 230 240 250
210 220 230 240 250 260
mKIAA1 LPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPS-YYPSFLPYFLSMLP
:::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
gi|747 LPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLP
260 270 280 290 300 310
270 280 290 300 310 320
mKIAA1 MSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSH
::::..::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|747 MSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSH
320 330 340 350 360 370
330 340 350 360 370 380
mKIAA1 QSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
:::::::::::::::.::::::::::::::.::::::::::::::::::::::::::::
gi|747 QSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
380 390 400 410 420 430
>>gi|109079877|ref|XP_001091221.1| PREDICTED: similar to (983 aa)
initn: 1490 init1: 1490 opt: 2499 Z-score: 2234.2 bits: 423.5 E(): 9.7e-116
Smith-Waterman score: 2499; 91.260% identity (95.116% similar) in 389 aa overlap (3-384:596-983)
10 20
mKIAA1 QQSRPALGKLLP------RPSNLSVEEHRASA
: :: . :: :: .: :::.::::
gi|109 APVGQRRFSAGPGSTPGQLWGSPGLEGPLASPPARDERLPSQQPPSRPPHLPVEERRASA
570 580 590 600 610 620
30 40 50 60 70 80
mKIAA1 PAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQ
::: .::::::::::::::::::::::::::::::::::::::::::::.::::::::::
gi|109 PAGGGPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQ
630 640 650 660 670 680
90 100 110 120 130 140
mKIAA1 LPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQ
::::::::::::::::::::: ::::::::::: ::..::::::::::::::::::::::
gi|109 LPACSVMFSGQHYPLCCLPPP-LIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPPPQ
690 700 710 720 730 740
150 160 170 180 190 200
mKIAA1 PTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHY
::::::::::::::.::::::::::::..::::::: :::::::::: ::::::::::::
gi|109 PTHMAPLGQFVSLQAQHPRMPLQRLDNDVDLRGDQHSLGSFTYSTSAPGPALSPSVPLHY
750 760 770 780 790 800
210 220 230 240 250 260
mKIAA1 LPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPS-YYPSFLPYFLSMLP
:::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
gi|109 LPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLP
810 820 830 840 850 860
270 280 290 300 310 320
mKIAA1 MSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSH
::::..:::::::::::::::::::::::::::::::::::::::::::::::::::::.
gi|109 MSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSR
870 880 890 900 910 920
330 340 350 360 370 380
mKIAA1 QSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
:::::::::::::::.::::::::::::::.::::::::::::::::::::::::::::
gi|109 QSEQTLCVVCFSDFETRQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
930 940 950 960 970 980
>>gi|114603535|ref|XP_001136577.1| PREDICTED: ring finge (430 aa)
initn: 1738 init1: 1738 opt: 2490 Z-score: 2230.8 bits: 421.7 E(): 1.5e-115
Smith-Waterman score: 2490; 91.517% identity (94.602% similar) in 389 aa overlap (3-384:44-430)
10 20
mKIAA1 QQSRPALGKLLP------RPSNLSVEEHRASA
: :: . :: :: .: :::.::::
gi|114 APVGQRRFSAGPGSTPGQLWGSPGLEGPLASPPARDERLPSQQPPSRPPHLPVEERRASA
20 30 40 50 60 70
30 40 50 60 70 80
mKIAA1 PAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQ
::: :::::::::::::::::::::::::::::::::::::::::::::.::::::::::
gi|114 PAGGSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQ
80 90 100 110 120 130
90 100 110 120 130 140
mKIAA1 LPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQ
::::::::::::::::::::: ::::::::::: ::..::::::::::::::::::::::
gi|114 LPACSVMFSGQHYPLCCLPPP-LIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPPPQ
140 150 160 170 180 190
150 160 170 180 190 200
mKIAA1 PTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHY
:::::::::::::::::::::::::::..:::::: :::::::::: ::::::::::::
gi|114 PTHMAPLGQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSAPGPALSPSVPLHY
200 210 220 230 240 250
210 220 230 240 250 260
mKIAA1 LPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPS-YYPSFLPYFLSMLP
::::::::::::: :::::::::::::::::::::::::::::: ::::::::::::::
gi|114 LPHDPLHQELSFG-PYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLP
260 270 280 290 300 310
270 280 290 300 310 320
mKIAA1 MSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSH
::::..::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 MSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSH
320 330 340 350 360 370
330 340 350 360 370 380
mKIAA1 QSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
:::::::::::::::.::::::::::::::.::::::::::::::::::::::::::::
gi|114 QSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
380 390 400 410 420 430
>>gi|81908627|sp|Q4V7B8.1|RNF44_RAT RecName: Full=RING f (350 aa)
initn: 1980 init1: 1980 opt: 2482 Z-score: 2224.9 bits: 420.3 E(): 3.2e-115
Smith-Waterman score: 2482; 98.576% identity (99.430% similar) in 351 aa overlap (34-384:1-350)
10 20 30 40 50 60
mKIAA1 RPALGKLLPRPSNLSVEEHRASAPAGRSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTV
::::::::::::::::.:::::::::::::
gi|819 MLHPATQQSPFMVDLHDQVHQGPVPLSYTV
10 20 30
70 80 90 100 110 120
mKIAA1 TTVTTQGFPLPTSQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYH
:::::::::::.:::::::::::::::::::::::::::::::: ::::::::::: :::
gi|819 TTVTTQGFPLPASQHIPGCSAQQLPACSVMFSGQHYPLCCLPPP-LIQACTMQQLPVPYH
40 50 60 70 80
130 140 150 160 170 180
mKIAA1 TYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|819 TYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHP
90 100 110 120 130 140
190 200 210 220 230 240
mKIAA1 LGSFTYSTSATGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPP
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
gi|819 LGSFTYSTSATGPTLSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPP
150 160 170 180 190 200
250 260 270 280 290 300
mKIAA1 PPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|819 PPPPPPPSYYPSFLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALLNLAERLGDAK
210 220 230 240 250 260
310 320 330 340 350 360
mKIAA1 PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|819 PRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWL
270 280 290 300 310 320
370 380
mKIAA1 KANRTCPICRADASEVPREAE
:::::::::::::::::::::
gi|819 KANRTCPICRADASEVPREAE
330 340 350
>>gi|194668435|ref|XP_610473.4| PREDICTED: similar to RI (432 aa)
initn: 1498 init1: 1498 opt: 2463 Z-score: 2206.7 bits: 417.2 E(): 3.3e-114
Smith-Waterman score: 2463; 89.610% identity (95.844% similar) in 385 aa overlap (1-384:49-432)
10 20 30
mKIAA1 QQSRPALGKLLPRPSNLSVEEHRASAPAGR
:. : .: :::..: :::.:::::::
gi|194 QRRFPAGPSSSPGQLWGSPSHEGPLASLPAQDERFPSQQLPPRPAHLPVEERRASAPAGG
20 30 40 50 60 70
40 50 60 70 80 90
mKIAA1 SPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTSQHIPGCSAQQLPAC
:::::::..:::::::::::::::::::::::::::::::::::..::::::::::::::
gi|194 SPRMLHPVSQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPAGQHIPGCSAQQLPAC
80 90 100 110 120 130
100 110 120 130 140 150
mKIAA1 SVMFSGQHYPLCCLPPPQLIQACTMQQLPGPYHTYPHLISSDHYILHPPPPAPPPQPTHM
::::::::::::::::: ::::::::::: ::..::::::::::::::::::: :::.::
gi|194 SVMFSGQHYPLCCLPPP-LIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPHPQPAHM
140 150 160 170 180 190
160 170 180 190 200 210
mKIAA1 APLGQFVSLQTQHPRMPLQRLDNEMDLRGDQHPLGSFTYSTSATGPALSPSVPLHYLPHD
::::::.::::::::::::::::..:::::::::::::::::: ::.:: :::.::::::
gi|194 APLGQFMSLQTQHPRMPLQRLDNDVDLRGDQHPLGSFTYSTSAPGPTLSASVPMHYLPHD
200 210 220 230 240 250
220 230 240 250 260
mKIAA1 PLHQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPS-YYPSFLPYFLSMLPMSPT
::.::::::::::.::::::::::::::::::::::::: ::::::::::::::::::
gi|194 TLHHELSFGVPYSHVMPRRLSTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMSPT
260 270 280 290 300 310
270 280 290 300 310 320
mKIAA1 TVGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQ
..:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
gi|194 AMGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFHPDSHQSEQ
320 330 340 350 360 370
330 340 350 360 370 380
mKIAA1 TLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVPREAE
:::::::::::.::::::::::::::.::::::::::::::::::::::::::::
gi|194 TLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADASEVPREAE
380 390 400 410 420 430
384 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Thu Mar 12 16:54:10 2009 done: Thu Mar 12 17:00:27 2009
Total Scan time: 861.030 Total Display time: 0.100
Function used was FASTA [version 34.26.5 April 26, 2007]