FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0059.ptfa, 670 aa vs ./tmplib.26680 library 1768347 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.6232+/-0.00638; mu= 10.6758+/- 0.426 mean_var=233.5717+/-56.687, 0's: 0 Z-trim: 6 B-trim: 109 in 1/35 Lambda= 0.0839 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0843 ( 690 res) mfj19219 ( 690) 1974 252 1.3e-67 mKIAA0613 ( 730 res) mfj11041 ( 730) 263 45 3e-05 >>mKIAA0843 ( 690 res) mfj19219 (690 aa) initn: 1776 init1: 728 opt: 1974 Z-score: 1306.3 bits: 252.1 E(): 1.3e-67 Smith-Waterman score: 2324; 51.130% identity (59.344% ungapped) in 708 aa overlap (25-670:19-690) 10 20 30 40 50 60 mKIAA0 SSFLLLSVPSAKDPVAMVKEKVAHPQDPHHSSEKPVIHCHKCGEPCKGEVLRVQTKHFHI : .:. .:. ::.:..::. :::::.::...:::: mKIAA0 TTQSKGITMNTSIPYQQSPYSPRGGSN--VIQCYRCGDTCKGEVVRVHNNHFHI 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 KCFTCKVCGCDLAQGGFFIKNGDYLCTLDYQRMYGTRCHGCGEFVEGEVVTALGKTYHPN .::::.:::: :::.:::.:: .:.:: :::..::::: .: .:. :::..:::.::::. mKIAA0 RCFTCQVCGCGLAQSGFFFKNQEYICTQDYQQLYGTRCDSCRDFITGEVISALGRTYHPK 60 70 80 90 100 110 130 140 150 160 170 mKIAA0 CFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSS-PKEASCSSNCAGCGRDIKNGQAL ::.:..:..::: ::.:::.:..:.:: :.: :.:: : . :.:::: ..::.::.: mKIAA0 CFVCSLCRKPFPIGDKVTFSGKECVCQTCSQSMTSSKPIKIRGPSHCAGCKEEIKHGQSL 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA0 LALDKQWHLGCFKCKSCGKVLTGEYISKDGSPYCEKDYQGLFGVKCEACHQFITGKVLEA ::::::::..::::..:. .:::::::::: ::::.::.. ::.:::.: ..:.:.:::: mKIAA0 LALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHSQFGIKCETCDRYISGRVLEA 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA0 GDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYSR : :::::.:::: ::.::::::::::: :: :::: :::....:.::. ::: :: : mKIAA0 GGKHYHPTCARCVRCHQMFTEGEEMYLTGSEVWHPICKQAARAEKKLKHRRTSETSI-SP 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA0 PGSSIPGSPGHTIYAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYTSGYEDKQE ::::: :::...: ::::::::.::::::.::::.::...:::::.::: .. : mKIAA0 PGSSI-GSPNRVICAKVDNEILNYKDLAALPKVKSIYEVQRPDLISYEPHSRYTSDEMLE 300 310 320 330 340 350 360 370 380 390 400 410 mKIAA0 RQSLGESPRTLSPTPSAEGYQ--DVRDRMIHRSTSQGSINSPVYSRHSYTPTTSRSPQHF : . ::: :::: : . :. :.:.: :..: : :.::.:::....:: :::: :. mKIAA0 RCGYGESLGTLSPY-SQDIYENLDLRQR---RASSPGYIDSPTYSRQGMSPTFSRSP-HY 360 370 380 390 400 420 430 440 450 460 470 mKIAA0 HRPGNEPSSGRNSPLPYRPDSRPLTPTYAQAPKHFHVPDQGINIYRKPPIYKQHGTDPRR .: : : :::.:: . : : ::: :::::::.: ::::::::::.:: mKIAA0 YRSG--PESGRSSPYHSQLDVRSSTPTSYQAPKHFHIPAGESNIYRKPPIYKRHGDLSTA 410 420 430 440 450 460 480 490 500 mKIAA0 RSSGREED-------------------EEELL---------RRRQLQ---EEQ-----LM .: :: : : : :... ::. . mKIAA0 TKSKTSEDISQASKYSPAYSPDPYYASESEYWTYHGSPKVPRARRFSSGGEEEDFDRSMH 470 480 490 500 510 520 510 520 530 540 mKIAA0 KLNSGLGQLILKEEMEKESRE--------RASLASR-------YDSPLHSA--SH--APS ::.::.:.:::::::. .: :.: .:: :. .... :: : : mKIAA0 KLQSGIGRLILKEEMKARSSSYADPWTPPRSSTSSREALHTTGYEMSFNGSPRSHYLADS 530 540 550 560 570 580 550 560 570 580 590 mKIAA0 ----SKTSSLPGYGKNGLHRPVSTDFAQYNSYGDISGGVRDYQTLPDGHMPAVRMDRGVS ::..:::.: .::::: :.:. .:.:.. .. :.:.: mKIAA0 DPLISKSASLPAYRRNGLHRTPSADLFHYDSMNAVNWGMREY------------------ 590 600 610 620 600 610 620 630 640 650 mKIAA0 MPNMLEPKIFPYEMLMVTNRGRNKILRDVDRTRLERHLAPEVFWEIFGMSIQEFDKLPLW ::.:::.:.::.::::.. .:::::::::::. : :...:::.:.::..: :: mKIAA0 -------KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFERLALW 630 640 650 660 670 660 670 mKIAA0 RRNDMKKKAKLF .::..::.:.:: mKIAA0 KRNELKKQARLF 680 690 >>mKIAA0613 ( 730 res) mfj11041 (730 aa) initn: 244 init1: 190 opt: 263 Z-score: 186.5 bits: 45.0 E(): 3e-05 Smith-Waterman score: 340; 29.947% identity (32.184% ungapped) in 187 aa overlap (31-215:548-723) 10 20 30 40 50 60 mKIAA0 SSFLLLSVPSAKDPVAMVKEKVAHPQDPHHSSEKPVIHCHKCGEPCKGEVLRVQTKHFHI ::. :. : .:.. .: : .. . .: mKIAA0 PWGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPL--CGHCNNVIRGPFLVAMGRSWHP 520 530 540 550 560 570 70 80 90 100 110 120 mKIAA0 KCFTCKVCGCDLAQGGFFIKNGDYLCTLDYQRMYGTRCHGCGEFVEGEVVTALGKTYHPN . :.: : .::. : .... : :..... : :. . :::. :: .:.: . mKIAA0 EEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPICAKCNTKIMGEVMHALRQTWHTT 580 590 600 610 620 630 130 140 150 160 170 180 mKIAA0 CFACTICKRPFPPGDRVTFNGRDCLCQLCAQPMSSSPKEASCSSNCAGCGRDIKNGQALL ::.:. ::.:: :. . :. .: ..:. . :..: :: .. :. .. mKIAA0 CFVCAACKKPF--GNSL-FHMED------GEPYCEKDYINLFSTKCHGCDFPVEAGDKFI 640 650 660 670 680 190 200 210 220 230 mKIAA0 -ALDKQWHLGCFKCKSCGKVLTGE-YISKDGSPYCEKDYQGLFGVKCEACHQFITGKVLE :: . :: :: : : : :. . :: .: :.: mKIAA0 EALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAINV 690 700 710 720 730 240 250 260 270 280 290 mKIAA0 AGDKHYHPSCARCSRCNQMFTEGEEMYLQGSTVWHPDCKQSTKTEEKLRPTRTSSESIYS 670 residues in 1 query sequences 1768347 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:11:25 2006 done: Mon Mar 27 10:11:26 2006 Scan time: 0.820 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]