FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1582.ptfa, 1362 aa vs ./tmplib.26680 library 1767655 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.6727+/-0.00852; mu= -13.2675+/- 0.563 mean_var=441.1991+/-108.762, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.0611 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1093 ( 571 res) mbf01207 ( 571) 734 80 1.7e-15 mKIAA1460 ( 265 res) mpm12077 ( 265) 540 62 1.4e-10 >>mKIAA1093 ( 571 res) mbf01207 (571 aa) initn: 1106 init1: 535 opt: 734 Z-score: 370.5 bits: 79.7 E(): 1.7e-15 Smith-Waterman score: 1341; 43.586% identity (53.000% ungapped) in 608 aa overlap (820-1361:3-568) 790 800 810 820 830 840 mKIAA1 PQVQAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRL----QIQQQMLQA ...: :. :.::: : : : :::.:: mKIAA1 AMLSQLPQIPQFQLACQLLLQQQQQQQQLLQN 10 20 30 850 860 870 880 890 900 mKIAA1 QRNVSGPMRQQ-EQQVARTITNLQQQIQQHQRQLAQALLVKQPPPP-PPPPHLSLHPSAG ::..: .::: :::.:: .. :::: ::.:.: : . ..: : : ::: mKIAA1 QRKISQAVRQQQEQQLARMVSALQQQQQQQQQQQRQPSMKHSPSHPVGPKPHL------- 40 50 60 70 80 910 920 930 940 950 960 mKIAA1 KSGMESFPPPPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSIDMSSGLSVKDPS ... : ::::: :: .: : : . ... ...:. :. . mKIAA1 ----DNMVPNALNVGLPDLPTK---------GPIP--GYGSGFSSGGMDY--GMVGGKEA 90 100 110 120 970 980 990 1000 1010 1020 mKIAA1 QSQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQ ..::. ::: . : .: :.:. . . :.::: . :::. . :...:.: mKIAA1 GTESRFKQWT--SMMEGLPSVATQ-EATMHKNGAIVA------PGKTRGGSPYNQFDIIP 130 140 150 160 170 1030 1040 1050 1060 1070 1080 mKIAA1 -NSESPASPPVAVPHSWSRAKSD-SDKI-SNGSSISWPPEFHPGVPWKGLQNIDPENDPD .. . . :.. :: ::: ..:: :..:. ::::::.:::::::.::::::.:: mKIAA1 GDTLGGHTGPAG--DSWLPAKSPPTNKIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPY 180 190 200 210 220 230 1090 1100 mKIAA1 VTPGSVPTGPTINTTIQDVNRYLLK----------------------------------S :::::: : : .. : :... ::. . mKIAA1 VTPGSV-LGGTTTSPIVDTDHQLLRDNTTGSNSSLNTSLPSPGAWPYSASDNSFTNVHST 240 250 260 270 280 290 1110 1120 1130 1140 1150 1160 mKIAA1 GGKLSDIKSTWSSGPASHTQASLSHELWK---VPRNTTAPTRPPPGLANPKPSSTWG-TS ..:. : ::::: : .:. . ::...:: :::: ::::::.::::.: :. :. mKIAA1 SAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKPASPWSSTA 300 310 320 330 340 350 1170 1180 1190 1200 1210 mKIAA1 PL---GW---TSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFH : :: : .:.:.:: : : : ::::.:::::::::::::.:.:::::.::: mKIAA1 PRSVRGWGTQDSRIASASTWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFH 360 370 380 390 400 410 1220 1230 1240 1250 1260 1270 mKIAA1 LNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQ-----AL ::::::.:..:::.:.:::::: .:::::::::::::::: :.::.:::::.: : mKIAA1 LNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATEDEVSRFLAQAQPPTPAAT 420 430 440 450 460 470 1280 1290 1300 1310 1320 mKIAA1 P--PTSSWQS-SSGGSQ-----PRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWGGV : :...::: .. .: : :. :.. :: . ... .. . :.: ::: mKIAA1 PSAPATGWQSLETSQNQADPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGTS--LWGP- 480 490 500 510 520 530 1330 1340 1350 1360 mKIAA1 PQYSSSLWGPPSAEDARVIGSPTPLNTLLPGDLLSGESI :.::::::: :..:: . .:::.:: ::::::.: : mKIAA1 PNYSSSLWGVPTVEDPHRMGSPAPL---LPGDLLGGGSDSI 540 550 560 570 >>mKIAA1460 ( 265 res) mpm12077 (265 aa) initn: 589 init1: 273 opt: 540 Z-score: 282.4 bits: 62.3 E(): 1.4e-10 Smith-Waterman score: 630; 41.532% identity (48.131% ungapped) in 248 aa overlap (230-451:4-243) 200 210 220 230 240 250 mKIAA1 NKAPSGPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSPTWGEPQKPKSQNWGDGQR :.: .:::: .:.. :: : :.:::::. mKIAA1 SNQWGGC--KEDKS-AWNDSQKSK-QGWGDGQK 10 20 260 270 280 290 300 310 mKIAA1 ANPAWSTGAGD-WADSSSVLGHLGDGKKNGSGWDADGNRSGSGWNDATRCGTSGWGSGTN .. .:: .::: :..:: .: :...:..:. .:..:: ::::. . .. ::.. : mKIAA1 SSQGWSISAGDNWGESSRS-NHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNIN 30 40 50 60 70 80 320 330 340 350 mKIAA1 AKVNPGTNWGESLKPGPQQNWAHKPQDNNVSNWGGA-----------------------A : ...: :: ::. .:.:. :. :. .:: . : mKIAA1 P--NNSSGWDESSKPNSSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPA 90 100 110 120 130 140 360 370 380 390 400 410 mKIAA1 SVKQTGTGWIGGPLPVKQKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSTYNNKTVN . : ::::.:::.:. :. : :::::::: ::::::::::::::::::: :: :.:: mKIAA1 TSKPPGTGWLGGPIPAPAKEE-EPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVN 150 160 170 180 190 200 420 430 440 450 460 470 mKIAA1 MWDRNNPVI--QSSTTAPATPTTPTSSSTTHRAETPPSHQAGTQLNRSPLLGPVSSGWGE ::..: : .:. : :..:... . . : mKIAA1 MWNKNIPEASGRSDQQAQMHRLLPAASAVSSKETSSGSGKRSRVECRGIVEASFVLTCLS 210 220 230 240 250 260 480 490 500 510 520 530 mKIAA1 MPSVHSKAENSWGEPSSPCTLVDNGTAAWGKPPSSGSGWDHPAEPVVPFGRASAPAAAPA 1362 residues in 1 query sequences 1767655 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:48:47 2006 done: Mon Mar 27 10:48:48 2006 Scan time: 1.200 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]