FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1821.ptfa, 268 aa
 vs ./tmplib.26680 library

1768749 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.9668+/-0.00722; mu= -2.8454+/- 0.474
 mean_var=356.4186+/-86.264, 0's: 0 Z-trim: 5  B-trim: 143 in 1/35
 Lambda= 0.0679

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0665  ( 905 res)   mbg06337                   ( 905)  925  104   2e-23


>>mKIAA0665  ( 905 res)   mbg06337                        (905 aa)
 initn: 1039 init1: 686 opt: 925  Z-score: 512.7  bits: 104.3 E(): 2e-23
Smith-Waterman score: 925;  56.078% identity (56.746% ungapped) in 255 aa overlap (14-267:653-905)

                                10        20        30        40   
mKIAA1                  WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVYCKL
                                     :::..:.::  :.. . ::.:...:. ::.
mKIAA0 SELEKDSAAAGEQHGRLRQENLQLVHRANALEEQLKEQEFRAQEKVLEETRKQKELLCKM
            630       640       650       660       670       680  

            50        60        70        80        90       100   
mKIAA1 EREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRLKDE
       ::::: :.: :..:.:::.:::..::. .  ::.. :.:.::.:.: :..:. . ::..:
mKIAA0 EREKSIEIENLQARLQQLDEENSELRSCTPCLKANIERLEEEKQKMLDEIEELTQRLSEE
            690       700       710       720       730       740  

           110       120       130       140       150        160  
mKIAA1 MDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSS-GLG
       ..  ..: :.: ..: .::...:::::::::::..:::::. .:. :.  :::::: :: 
mKIAA0 QENKRKMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLRLEVEQR-RGRSSSLGLQ
            750       760       770       780       790        800 

            170       180       190       200       210       220  
mKIAA1 EFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSLAAE
       :.:.:::: :::.::.::::.:..:..:::.:::::..::.  ::.::.:.  ..:::::
mKIAA0 EYNSRARESELEQEVRRLKQDNRNLKEQNDELNGQIITLSIQGAKSLFSTSF-SESLAAE
             810       820       830       840       850        860

            230       240       250       260        
mKIAA1 IDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH
       :...::::::::...::::::::..:.:.::.:::. ::::::.: 
mKIAA0 ISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAILETNPSILEVK 
              870       880       890       900      




268 residues in 1 query   sequences
1768749 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:53:52 2006 done: Mon Mar 27 10:53:53 2006
 Scan time:  0.500 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]