# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg06507.fasta.nr -Q ../query/mKIAA1821.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1821, 268 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7909422 sequences Expectation_n fit: rho(ln(x))= 5.7191+/-0.000196; mu= 6.2066+/- 0.011 mean_var=117.2296+/-22.201, 0's: 32 Z-trim: 78 B-trim: 27 in 1/65 Lambda= 0.118456 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|67472135|sp|Q8BQP8.1|RFIP4_MOUSE RecName: Full= ( 635) 1629 289.2 1.2e-75 gi|149053578|gb|EDM05395.1| rCG34082 [Rattus norve ( 637) 1624 288.4 2.1e-75 gi|194217319|ref|XP_001504084.2| PREDICTED: RAB11 ( 631) 1568 278.8 1.6e-72 gi|21732307|emb|CAD38543.1| hypothetical protein [ ( 296) 1555 276.2 4.4e-72 gi|109114059|ref|XP_001109342.1| PREDICTED: simila ( 596) 1557 276.9 5.6e-72 gi|119600671|gb|EAW80265.1| RAB11 family interacti ( 557) 1555 276.5 6.8e-72 gi|119911578|ref|XP_585093.3| PREDICTED: similar t ( 683) 1556 276.8 6.9e-72 gi|114668239|ref|XP_523772.2| PREDICTED: RAB11 fam ( 593) 1555 276.6 7.1e-72 gi|67472134|sp|Q86YS3.1|RFIP4_HUMAN RecName: Full= ( 637) 1555 276.6 7.4e-72 gi|73967152|ref|XP_548279.2| PREDICTED: similar to ( 621) 1542 274.4 3.4e-71 gi|21757176|dbj|BAC05045.1| unnamed protein produc ( 535) 1540 273.9 3.9e-71 gi|126313873|ref|XP_001368461.1| PREDICTED: simila ( 633) 1476 263.1 8.6e-68 gi|126313871|ref|XP_001368423.1| PREDICTED: simila ( 635) 1476 263.1 8.6e-68 gi|76362376|dbj|BAE45290.1| Rab11-family interacti ( 484) 1388 247.9 2.4e-63 gi|76362374|dbj|BAE45289.1| Rab11-family interacti ( 621) 1388 248.0 2.8e-63 gi|47212717|emb|CAF90515.1| unnamed protein produc ( 558) 1300 232.9 8.9e-59 gi|134025604|gb|AAI35990.1| Rab11fip4 protein [Xen ( 633) 1296 232.3 1.6e-58 gi|190338799|gb|AAI62520.1| RAB11 family interacti ( 502) 1240 222.6 1e-55 gi|189546635|ref|XP_685891.3| PREDICTED: similar t ( 385) 1234 221.5 1.7e-55 gi|47216243|emb|CAG05939.1| unnamed protein produc ( 645) 1168 210.5 6.1e-52 gi|51858715|gb|AAH81997.1| Rab11fip3 protein [Ratt ( 446) 927 169.1 1.2e-39 gi|195977143|gb|ACG63690.1| RAB11 family interacti ( 313) 924 168.4 1.3e-39 gi|148690536|gb|EDL22483.1| mCG132822, isoform CRA ( 489) 925 168.8 1.6e-39 gi|194381220|dbj|BAG64178.1| unnamed protein produ ( 460) 923 168.4 1.9e-39 gi|119606214|gb|EAW85808.1| RAB11 family interacti ( 484) 923 168.5 2e-39 gi|119606213|gb|EAW85807.1| RAB11 family interacti ( 486) 923 168.5 2e-39 gi|194374405|dbj|BAG57098.1| unnamed protein produ ( 491) 923 168.5 2e-39 gi|109490451|ref|XP_001062691.1| PREDICTED: simila (1011) 927 169.5 2.1e-39 gi|194219440|ref|XP_001496965.2| PREDICTED: simila ( 652) 924 168.8 2.2e-39 gi|168983993|emb|CAQ11003.1| RAB11 family interact ( 677) 923 168.6 2.5e-39 gi|14424221|sp|O75154.1|RFIP3_HUMAN RecName: Full= ( 756) 923 168.7 2.7e-39 gi|160904124|gb|ABX52111.1| RAB11 family interacti ( 446) 918 167.6 3.4e-39 gi|109127107|ref|XP_001118464.1| PREDICTED: rab11- ( 682) 918 167.8 4.6e-39 gi|119916632|ref|XP_001256128.1| PREDICTED: RAB11 ( 696) 912 166.7 9.5e-39 gi|47225977|emb|CAG04351.1| unnamed protein produc ( 970) 872 160.1 1.4e-36 gi|32492933|gb|AAN05091.1| MU-MB-17.148 [Homo sapi ( 225) 836 153.2 3.6e-35 gi|224075349|ref|XP_002192621.1| PREDICTED: RAB11 ( 590) 658 123.3 9.9e-26 gi|210131025|gb|EEA78695.1| hypothetical protein B ( 344) 567 107.5 3.3e-21 gi|215490532|gb|EEC00175.1| conserved hypothetical ( 259) 495 95.0 1.4e-17 gi|163916078|gb|AAI57341.1| LOC100135220 protein [ ( 420) 455 88.4 2.2e-15 gi|165970502|gb|AAI58362.1| LOC100135220 protein [ ( 428) 455 88.4 2.2e-15 gi|189235314|ref|XP_975062.2| PREDICTED: similar t ( 459) 413 81.3 3.3e-13 gi|193920253|gb|EDW19120.1| GI11698 [Drosophila mo ( 533) 377 75.2 2.6e-11 gi|194119415|gb|EDW41458.1| GM25461 [Drosophila se ( 526) 374 74.7 3.7e-11 gi|193898987|gb|EDV97853.1| GH17096 [Drosophila gr ( 544) 373 74.5 4.3e-11 gi|17862096|gb|AAL39525.1| LD08622p [Drosophila me ( 305) 369 73.6 4.6e-11 gi|45445899|gb|AAS65011.1| nuclear fallout, isofor ( 316) 369 73.6 4.8e-11 gi|7294403|gb|AAF49749.1| nuclear fallout, isoform ( 502) 369 73.8 6.5e-11 gi|17945944|gb|AAL49017.1| RE46851p [Drosophila me ( 502) 369 73.8 6.5e-11 gi|2961133|gb|AAC05669.1| nuclear fallout [Drosoph ( 502) 369 73.8 6.5e-11 >>gi|67472135|sp|Q8BQP8.1|RFIP4_MOUSE RecName: Full=Rab1 (635 aa) initn: 1629 init1: 1629 opt: 1629 Z-score: 1514.7 bits: 289.2 E(): 1.2e-75 Smith-Waterman score: 1629; 100.000% identity (100.000% similar) in 258 aa overlap (11-268:378-635) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY :::::::::::::::::::::::::::::: gi|674 KKVTELENDSLTSGGLKSKLKQENMQLVHRVHELEEMVKDQETTAEQALEEEARRHREVY 350 360 370 380 390 400 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL 410 420 430 440 450 460 110 120 130 140 150 160 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSSG 470 480 490 500 510 520 170 180 190 200 210 220 mKIAA1 LGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 LGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSLA 530 540 550 560 570 580 230 240 250 260 mKIAA1 AEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH :::::::::::::::::::::::::::::::::::::::::::::::: gi|674 AEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 590 600 610 620 630 >>gi|149053578|gb|EDM05395.1| rCG34082 [Rattus norvegicu (637 aa) initn: 1624 init1: 1624 opt: 1624 Z-score: 1510.1 bits: 288.4 E(): 2.1e-75 Smith-Waterman score: 1624; 99.612% identity (100.000% similar) in 258 aa overlap (11-268:380-637) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY :::::::::::::::::::::::::::::: gi|149 KKVTELENDSLASGGLKSKLKLENVQLVHRVHELEEMVKDQETTAEQALEEEARRHREVY 350 360 370 380 390 400 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|149 CKLEREKSTELELLNTRVQQLEEENTDLRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 410 420 430 440 450 460 110 120 130 140 150 160 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSSG 470 480 490 500 510 520 170 180 190 200 210 220 mKIAA1 LGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSLA 530 540 550 560 570 580 230 240 250 260 mKIAA1 AEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH :::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 590 600 610 620 630 >>gi|194217319|ref|XP_001504084.2| PREDICTED: RAB11 fami (631 aa) initn: 903 init1: 903 opt: 1568 Z-score: 1458.4 bits: 278.8 E(): 1.6e-72 Smith-Waterman score: 1568; 96.525% identity (98.456% similar) in 259 aa overlap (11-268:373-631) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::: ::::::::::::::.: gi|194 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETMAEQALEEEARRHREAY 350 360 370 380 390 400 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL :::::::::.:::::::::::::::.:::::.::::::::::::::::::::::::::: gi|194 SKLEREKSTEIELLNTRVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 410 420 430 440 450 460 110 120 130 140 150 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSS- ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|194 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSSSS 470 480 490 500 510 520 160 170 180 190 200 210 mKIAA1 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|194 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQCL 530 540 550 560 570 580 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 590 600 610 620 630 >>gi|21732307|emb|CAD38543.1| hypothetical protein [Homo (296 aa) initn: 921 init1: 893 opt: 1555 Z-score: 1450.4 bits: 276.2 E(): 4.4e-72 Smith-Waterman score: 1555; 95.753% identity (99.228% similar) in 259 aa overlap (11-268:38-296) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::::::::::::::::::.: gi|217 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAY 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL ::::::.::.::::.::::::::::.:::::.::::::::::::::::::::::::::: gi|217 GKLEREKATEVELLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 70 80 90 100 110 120 110 120 130 140 150 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRS-SS ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: :: gi|217 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSASS 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL :::::::::::::::::::::::::.::::::::::::::::::::::::::.::::::: gi|217 GLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNLFAAQTKAQSL 190 200 210 220 230 240 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 250 260 270 280 290 >>gi|109114059|ref|XP_001109342.1| PREDICTED: similar to (596 aa) initn: 923 init1: 895 opt: 1557 Z-score: 1448.6 bits: 276.9 E(): 5.6e-72 Smith-Waterman score: 1557; 95.753% identity (99.228% similar) in 259 aa overlap (11-268:338-596) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::::::::::::::::::.: gi|109 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAY 310 320 330 340 350 360 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL ::::::.::.::::.::::::::::.:::::.::::::::::::::::::::::::::: gi|109 SKLEREKATEVELLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 370 380 390 400 410 420 110 120 130 140 150 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRS-SS ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: :: gi|109 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSASS 430 440 450 460 470 480 160 170 180 190 200 210 mKIAA1 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL :::::::::::::::::::::::::.::::::::::::::::::::::::::.::::::: gi|109 GLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNLFAAQTKAQSL 490 500 510 520 530 540 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 550 560 570 580 590 >>gi|119600671|gb|EAW80265.1| RAB11 family interacting p (557 aa) initn: 921 init1: 893 opt: 1555 Z-score: 1447.1 bits: 276.5 E(): 6.8e-72 Smith-Waterman score: 1555; 95.753% identity (99.228% similar) in 259 aa overlap (11-268:299-557) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::::::::::::::::::.: gi|119 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAY 270 280 290 300 310 320 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL ::::::.::.::::.::::::::::.:::::.::::::::::::::::::::::::::: gi|119 GKLEREKATEVELLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 330 340 350 360 370 380 110 120 130 140 150 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRS-SS ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: :: gi|119 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSASS 390 400 410 420 430 440 160 170 180 190 200 210 mKIAA1 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL :::::::::::::::::::::::::.::::::::::::::::::::::::::.::::::: gi|119 GLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNLFAAQTKAQSL 450 460 470 480 490 500 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 510 520 530 540 550 >>gi|119911578|ref|XP_585093.3| PREDICTED: similar to RA (683 aa) initn: 893 init1: 893 opt: 1556 Z-score: 1446.9 bits: 276.8 E(): 6.9e-72 Smith-Waterman score: 1556; 95.753% identity (99.228% similar) in 259 aa overlap (11-268:425-683) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::::::::::::::::::.: gi|119 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAY 400 410 420 430 440 450 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL :::::.:::.:::.:::::::::::.:::::.::::::::::::::::::::::::::: gi|119 SKLERERSTEIELLTTRVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 460 470 480 490 500 510 110 120 130 140 150 160 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSSG :::::::::::::::.::::::::::::::::::::.::::::::::::::::::::::. gi|119 KDEMDLYKRMMDKLRHNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSSSS 520 530 540 550 560 570 170 180 190 200 210 mKIAA1 -LGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL 580 590 600 610 620 630 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 640 650 660 670 680 >>gi|114668239|ref|XP_523772.2| PREDICTED: RAB11 family (593 aa) initn: 921 init1: 893 opt: 1555 Z-score: 1446.7 bits: 276.6 E(): 7.1e-72 Smith-Waterman score: 1555; 95.753% identity (99.228% similar) in 259 aa overlap (11-268:335-593) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::::::::::::::::::.: gi|114 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAY 310 320 330 340 350 360 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL ::::::.::.::::.::::::::::.:::::.::::::::::::::::::::::::::: gi|114 GKLEREKATEVELLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 370 380 390 400 410 420 110 120 130 140 150 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRS-SS ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: :: gi|114 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSASS 430 440 450 460 470 480 160 170 180 190 200 210 mKIAA1 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL :::::::::::::::::::::::::.::::::::::::::::::::::::::.::::::: gi|114 GLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNLFAAQTKAQSL 490 500 510 520 530 540 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 550 560 570 580 590 >>gi|67472134|sp|Q86YS3.1|RFIP4_HUMAN RecName: Full=Rab1 (637 aa) initn: 946 init1: 893 opt: 1555 Z-score: 1446.4 bits: 276.6 E(): 7.4e-72 Smith-Waterman score: 1555; 95.753% identity (99.228% similar) in 259 aa overlap (11-268:379-637) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::::::::::::::::::.: gi|674 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETTAEQALEEEARRHREAY 350 360 370 380 390 400 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL ::::::.::.::::.::::::::::.:::::.::::::::::::::::::::::::::: gi|674 GKLEREKATEVELLNARVQQLEEENTELRTTVTRLKSQTEKLDEERQRMSDRLEDTSLRL 410 420 430 440 450 460 110 120 130 140 150 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRS-SS ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: :: gi|674 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGRGRSASS 470 480 490 500 510 520 160 170 180 190 200 210 mKIAA1 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL :::::::::::::::::::::::::.::::::::::::::::::::::::::.::::::: gi|674 GLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNLFAAQTKAQSL 530 540 550 560 570 580 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|674 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 590 600 610 620 630 >>gi|73967152|ref|XP_548279.2| PREDICTED: similar to RAB (621 aa) initn: 876 init1: 876 opt: 1542 Z-score: 1434.5 bits: 274.4 E(): 3.4e-71 Smith-Waterman score: 1542; 94.595% identity (98.456% similar) in 259 aa overlap (11-268:363-621) 10 20 30 40 mKIAA1 WGTVAPGSAEVHELEEMVKDQETTAEQALEEEARRHREVY ::::::::::::: ::::::::::::::.: gi|739 KKVTELENDSLTNGDLKSKLKQENTQLVHRVHELEEMVKDQETMAEQALEEEARRHREAY 340 350 360 370 380 390 50 60 70 80 90 100 mKIAA1 CKLEREKSTELELLNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRL :::::::::.::::::::::::::..:::::.:::.::::::::::::::::::::::: gi|739 SKLEREKSTEIELLNTRVQQLEEENVELRTTVTRLKAQTEKLDEERQRMSDRLEDTSLRL 400 410 420 430 440 450 110 120 130 140 150 mKIAA1 KDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRRELEHLQMYKLDCERPGRGRSSS- ::: :::::.::::::::::::::::::::::::::.:::::::.:::::::::::::: gi|739 KDETDLYKRVMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMFKLDCERPGRGRSSSS 460 470 480 490 500 510 160 170 180 190 200 210 mKIAA1 GLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GLGEFNTRAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKNLFATQTKAQSL 520 530 540 550 560 570 220 230 240 250 260 mKIAA1 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH ::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 AAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH 580 590 600 610 620 268 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 00:21:24 2009 done: Mon Mar 16 00:26:47 2009 Total Scan time: 753.120 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]