# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg06414.fasta.nr -Q ../query/mKIAA0675.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0675, 265 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918902 sequences Expectation_n fit: rho(ln(x))= 6.0337+/-0.00019; mu= 5.9192+/- 0.011 mean_var=96.8703+/-18.568, 0's: 45 Z-trim: 53 B-trim: 0 in 0/65 Lambda= 0.130310 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|109734557|gb|AAI17955.1| DAZ interacting protei ( 998) 1578 306.6 1.1e-80 gi|148665687|gb|EDK98103.1| mCG128616, isoform CRA (1168) 1578 306.6 1.2e-80 gi|50400412|sp|Q7TPV2.2|DZIP3_MOUSE RecName: Full= (1204) 1578 306.6 1.3e-80 gi|158517947|ref|NP_001103487.1| DAZ interacting p (1204) 1578 306.6 1.3e-80 gi|149060392|gb|EDM11106.1| similar to Ubiquitin l ( 998) 1524 296.4 1.2e-77 gi|109493202|ref|XP_221487.4| PREDICTED: similar t (1204) 1524 296.5 1.4e-77 gi|148665686|gb|EDK98102.1| mCG128616, isoform CRA ( 777) 1300 254.2 4.8e-65 gi|114588371|ref|XP_001151742.1| PREDICTED: zinc f (1207) 1265 247.8 6.5e-63 gi|194378978|dbj|BAG58040.1| unnamed protein produ ( 629) 1256 245.9 1.3e-62 gi|29374007|gb|AAO72968.1| RNA-binding RING-H2 pro ( 652) 1256 245.9 1.3e-62 gi|74002609|ref|XP_535732.2| PREDICTED: similar to (1206) 1259 246.6 1.4e-62 gi|119600127|gb|EAW79721.1| zinc finger DAZ intera ( 826) 1256 246.0 1.6e-62 gi|50400482|sp|Q86Y13.2|DZIP3_HUMAN RecName: Full= (1208) 1256 246.1 2.1e-62 gi|149731331|ref|XP_001503296.1| PREDICTED: simila (1207) 1237 242.5 2.5e-61 gi|14582392|gb|AAK69484.1|AF279370_1 DZIP3 [Homo s ( 508) 1225 240.0 6.1e-61 gi|109658168|gb|AAI18084.1| DAZ interacting protei (1019) 1180 231.7 3.7e-58 gi|45649064|gb|AAS75122.1| UURF2 ubiquitin ligase ( 275) 1032 203.5 3.1e-50 gi|90081904|dbj|BAE90233.1| unnamed protein produc ( 224) 704 141.8 9.8e-32 gi|194384194|dbj|BAG64870.1| unnamed protein produ ( 522) 650 131.9 2.2e-28 gi|126325693|ref|XP_001363432.1| PREDICTED: simila ( 531) 312 68.4 2.9e-09 gi|90080922|dbj|BAE89942.1| unnamed protein produc ( 111) 234 53.2 2.2e-05 >>gi|109734557|gb|AAI17955.1| DAZ interacting protein 3, (998 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1604.9 bits: 306.6 E(): 1.1e-80 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 235 aa overlap (12-246:694-928) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|109 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 670 680 690 700 710 720 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA 730 740 750 760 770 780 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ 790 800 810 820 830 840 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT 850 860 870 880 890 900 230 240 250 260 mKIAA0 ASQPNAPQDPKSAQGSATWEGDKDMVRPNLLTVNTFRSERKRMV ::::::::::::::::::::::::: gi|109 ASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQC 910 920 930 940 950 960 >>gi|148665687|gb|EDK98103.1| mCG128616, isoform CRA_b [ (1168 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1604.0 bits: 306.6 E(): 1.2e-80 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 235 aa overlap (12-246:864-1098) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|148 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 840 850 860 870 880 890 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA 900 910 920 930 940 950 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ 960 970 980 990 1000 1010 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT 1020 1030 1040 1050 1060 1070 230 240 250 260 mKIAA0 ASQPNAPQDPKSAQGSATWEGDKDMVRPNLLTVNTFRSERKRMV ::::::::::::::::::::::::: gi|148 ASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQC 1080 1090 1100 1110 1120 1130 >>gi|50400412|sp|Q7TPV2.2|DZIP3_MOUSE RecName: Full=E3 u (1204 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1603.8 bits: 306.6 E(): 1.3e-80 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 235 aa overlap (12-246:900-1134) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|504 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 870 880 890 900 910 920 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA 930 940 950 960 970 980 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ 990 1000 1010 1020 1030 1040 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT 1050 1060 1070 1080 1090 1100 230 240 250 260 mKIAA0 ASQPNAPQDPKSAQGSATWEGDKDMVRPNLLTVNTFRSERKRMV ::::::::::::::::::::::::: gi|504 ASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQC 1110 1120 1130 1140 1150 1160 >>gi|158517947|ref|NP_001103487.1| DAZ interacting prote (1204 aa) initn: 1578 init1: 1578 opt: 1578 Z-score: 1603.8 bits: 306.6 E(): 1.3e-80 Smith-Waterman score: 1578; 100.000% identity (100.000% similar) in 235 aa overlap (12-246:900-1134) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|158 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 870 880 890 900 910 920 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA 930 940 950 960 970 980 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ 990 1000 1010 1020 1030 1040 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT 1050 1060 1070 1080 1090 1100 230 240 250 260 mKIAA0 ASQPNAPQDPKSAQGSATWEGDKDMVRPNLLTVNTFRSERKRMV ::::::::::::::::::::::::: gi|158 ASQPNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQC 1110 1120 1130 1140 1150 1160 >>gi|149060392|gb|EDM11106.1| similar to Ubiquitin ligas (998 aa) initn: 1575 init1: 1524 opt: 1524 Z-score: 1550.1 bits: 296.4 E(): 1.2e-77 Smith-Waterman score: 1524; 96.170% identity (99.149% similar) in 235 aa overlap (12-246:694-928) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|149 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 670 680 690 700 710 720 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA 730 740 750 760 770 780 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::..::: gi|149 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKATFPQ 790 800 810 820 830 840 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT :::::::::::::::::::::::::::::::::::::::::::.::::: ::.::::::: gi|149 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSEGEEKSAPDGSNASPSHT 850 860 870 880 890 900 230 240 250 260 mKIAA0 ASQPNAPQDPKSAQGSATWEGDKDMVRPNLLTVNTFRSERKRMV :::::.::::::.:::::::: ::. gi|149 ASQPNVPQDPKSSQGSATWEGAKDVDNDEEEEEPCVICHENLSSENLSVLPCAHKFHSQC 910 920 930 940 950 960 >>gi|109493202|ref|XP_221487.4| PREDICTED: similar to Ub (1204 aa) initn: 1550 init1: 1524 opt: 1524 Z-score: 1548.9 bits: 296.5 E(): 1.4e-77 Smith-Waterman score: 1524; 96.170% identity (99.149% similar) in 235 aa overlap (12-246:900-1134) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|109 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 870 880 890 900 910 920 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA 930 940 950 960 970 980 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::..::: gi|109 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKATFPQ 990 1000 1010 1020 1030 1040 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT :::::::::::::::::::::::::::::::::::::::::::.::::: ::.::::::: gi|109 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSEGEEKSAPDGSNASPSHT 1050 1060 1070 1080 1090 1100 230 240 250 260 mKIAA0 ASQPNAPQDPKSAQGSATWEGDKDMVRPNLLTVNTFRSERKRMV :::::.::::::.:::::::: ::. gi|109 ASQPNVPQDPKSSQGSATWEGAKDVDNDEEEEEPCVICHENLSSENLSVLPCAHKFHSQC 1110 1120 1130 1140 1150 1160 >>gi|148665686|gb|EDK98102.1| mCG128616, isoform CRA_a [ (777 aa) initn: 1290 init1: 1290 opt: 1300 Z-score: 1324.0 bits: 254.2 E(): 4.8e-65 Smith-Waterman score: 1401; 91.489% identity (91.489% similar) in 235 aa overlap (12-246:493-707) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|148 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 470 480 490 500 510 520 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA 530 540 550 560 570 580 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ 590 600 610 620 630 640 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT ::::::::::::::::::::::::::::::::::::::::::: gi|148 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSE----------------- 650 660 670 680 230 240 250 260 mKIAA0 ASQPNAPQDPKSAQGSATWEGDKDMVRPNLLTVNTFRSERKRMV :::::::::::::::::::::: gi|148 ---PNAPQDPKSAQGSATWEGDKDMDNEEEEEEPCVICHENLSPENLSVLPCAHKFHSQC 690 700 710 720 730 740 >>gi|114588371|ref|XP_001151742.1| PREDICTED: zinc finge (1207 aa) initn: 1262 init1: 1234 opt: 1265 Z-score: 1285.8 bits: 247.8 E(): 6.5e-63 Smith-Waterman score: 1265; 79.747% identity (91.139% similar) in 237 aa overlap (12-242:897-1133) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|114 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 870 880 890 900 910 920 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|114 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILMQQFLGRPLVKESFFRPILTVPQMPA 930 940 950 960 970 980 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::.::. ::: ::: ::.::.:.:.::.: :::.: :.: ..::::::::::::::: gi|114 VCPGVVSATGQPRAPLMTGIAWALPAPVGDAVPPSAGLGSDPSIMNWERITDRLKTAFPQ 990 1000 1010 1020 1030 1040 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT ::::::::::..:::.::::.:.::::::: ::::.:.::::.:. ::... : .::::. gi|114 QTRKELTDFLRKLKDAHGKSLSELTFDEIVCKISQFIDPKKSQSQGKSVSNVNCVSPSHS 1050 1060 1070 1080 1090 1100 230 240 250 260 mKIAA0 ASQPNAPQDPKSA------QGSATWEGDKDMVRPNLLTVNTFRSERKRMV :::.: : :: : :: ::::: gi|114 PSQPDAAQPPKPAWRPLTSQGPATWEGANNPDEEEEEEEPCVICHENLSPENLSVLPCAH 1110 1120 1130 1140 1150 1160 >>gi|194378978|dbj|BAG58040.1| unnamed protein product [ (629 aa) initn: 1251 init1: 1225 opt: 1256 Z-score: 1280.6 bits: 245.9 E(): 1.3e-62 Smith-Waterman score: 1256; 79.325% identity (91.139% similar) in 237 aa overlap (12-242:319-555) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|194 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 290 300 310 320 330 340 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|194 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILMQQFLGRPLVKESFFRPILTVPQMPA 350 360 370 380 390 400 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::.::. ::: ::: ::.::.:.:.::.: :::.: :.: ..::::::::::::::: gi|194 VCPGVVSATGQPRAPLMTGIAWALPAPVGDAVPPSAGLRSDPSIMNWERITDRLKTAFPQ 410 420 430 440 450 460 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT ::::::::::..:::..:::.:.::::::: ::::.:.::::.:. ::... : .::::. gi|194 QTRKELTDFLRKLKDAYGKSLSELTFDEIVCKISQFIDPKKSQSQGKSVSNVNCVSPSHS 470 480 490 500 510 520 230 240 250 260 mKIAA0 ASQPNAPQDPKSA------QGSATWEGDKDMVRPNLLTVNTFRSERKRMV :::.: : :: : :: ::::: gi|194 PSQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLPCAH 530 540 550 560 570 580 >>gi|29374007|gb|AAO72968.1| RNA-binding RING-H2 protein (652 aa) initn: 1251 init1: 1225 opt: 1256 Z-score: 1280.4 bits: 245.9 E(): 1.3e-62 Smith-Waterman score: 1256; 79.325% identity (91.139% similar) in 237 aa overlap (12-242:342-578) 10 20 30 40 mKIAA0 IMFPLCLLFYISNLESLQLKAAVDSWNAIVADVRNKIAFLR :::::::::::::::::::::::::::::: gi|293 QCRRDFGLLHLEQTEKECLNQLARVTHMAASNLESLQLKAAVDSWNAIVADVRNKIAFLR 320 330 340 350 360 370 50 60 70 80 90 100 mKIAA0 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILIQQFLGRPLVKESFFRPILTVPQMPA ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|293 TQYNEQINKVKQGFALSTLPPVQLPPPPPSPEILMQQFLGRPLVKESFFRPILTVPQMPA 380 390 400 410 420 430 110 120 130 140 150 160 mKIAA0 VCPGVISAAVQPRPPLMPGITWAMPTPIGDTVSPSASLCSEPLMINWERITDRLKTAFPQ :::::.::. ::: ::: ::.::.:.:.::.: :::.: :.: ..::::::::::::::: gi|293 VCPGVVSATGQPRAPLMTGIAWALPAPVGDAVPPSAGLRSDPSIMNWERITDRLKTAFPQ 440 450 460 470 480 490 170 180 190 200 210 220 mKIAA0 QTRKELTDFLQQLKDSHGKSVSRLTFDEIVYKISQMIEPKKSESEEKSAQDGNNASPSHT ::::::::::..:::..:::.:.::::::: ::::.:.::::.:. ::... : .::::. gi|293 QTRKELTDFLRKLKDAYGKSLSELTFDEIVCKISQFIDPKKSQSQGKSVSNVNCVSPSHS 500 510 520 530 540 550 230 240 250 260 mKIAA0 ASQPNAPQDPKSA------QGSATWEGDKDMVRPNLLTVNTFRSERKRMV :::.: : :: : :: ::::: gi|293 PSQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLPCAH 560 570 580 590 600 610 265 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sun Mar 15 20:19:29 2009 done: Sun Mar 15 20:24:52 2009 Total Scan time: 754.350 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]