FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0397.ptfa, 1032 aa vs ./tmplib.26680 library 1767985 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.4434+/-0.00475; mu= 16.4956+/- 0.318 mean_var=117.5114+/-26.108, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.1183 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1055 ( 979 res) mpf00228 ( 979) 179 42 0.00046 mKIAA1322 ( 645 res) mbh00387 ( 645) 166 40 0.0016 >>mKIAA1055 ( 979 res) mpf00228 (979 aa) initn: 97 init1: 97 opt: 179 Z-score: 165.3 bits: 42.1 E(): 0.00046 Smith-Waterman score: 179; 22.596% identity (25.269% ungapped) in 208 aa overlap (822-1018:725-921) 800 810 820 830 840 mKIAA0 SELEAGQELAAVCAAAYTIELLDTVALNLHRIDKDVQRC---DRNYWYFTTSNLERLRDI .:. :. : ...: :. ....::.. mKIAA1 HTRKFKDSMEPDYFQTLLQKALEKQNPASKQIELDLLRTLPNNKHYSSPTSEGIQKLRSV 700 710 720 730 740 750 850 860 870 880 890 900 mKIAA0 MCSYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKR-MGQNFPSGGAMDSHF . .. :.. :.:: ::. :.: :. ::... :. :. ... : ... . . :. mKIAA1 LLAFSWRNPDIGYCQGLNRLVAVALLYLDQED-AFWCLVTIVEVFMPRDYYTKTLLGSQ- 760 770 780 790 800 810 910 920 930 940 950 960 mKIAA0 ANMRSLIQILDSELFELM----HQNGDYTHFYFCYRWFLLDFKRELLYEDVFAVWE-VIW ...: . ..:. .: .: . . ::: . : :::. : .. . .: .:. .. mKIAA1 VDQRVFRDLLSEKLPRLHTHFEQYKVDYTLITF--NWFLVVFVDSVVSDILFKIWDSFLY 820 830 840 850 860 870 970 980 990 1000 1010 1020 mKIAA0 AARRISSEHFVLFIALALVE-AYREIIR-DNNMDFTDIIKFFNERAERHDAQEILRIARD . .. .. .:::: . .::.. ...:.. ...:.. ::.... :. mKIAA1 EGPKV-----IFRFALALFKYKEEEILKLQDSMSIFKYLRYFTRTIL--DARKLISISFG 880 890 900 910 920 1030 mKIAA0 LVHKVQMLIDNK mKIAA1 DLNPFPLRQIRNRRAYHLEKVRLELTELEAIREDFLRERDTSPDKGELVSDEEEDT 930 940 950 960 970 >>mKIAA1322 ( 645 res) mbh00387 (645 aa) initn: 66 init1: 66 opt: 166 Z-score: 155.4 bits: 39.7 E(): 0.0016 Smith-Waterman score: 172; 25.571% identity (27.723% ungapped) in 219 aa overlap (819-1032:414-620) 790 800 810 820 830 840 mKIAA0 APASELEAGQELAAVCAAAYTIELLDTVALNLHRIDKDVQRCDRNYWYFTTSN--LERLR .:. : :..: : : .. . :. mKIAA1 RAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLH 390 400 410 420 430 440 850 860 870 880 890 900 mKIAA0 DIMCSYVWEHLDMGYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMGQ-NF--PSGGAM .:. .:. . :.:::::: . : :.. ::. . :. ::.:... : : . : : mKIAA1 SILGAYTCYRPDVGYVQGMSFIAAVLILNLDTAD-AFIAFSNLLNKPCQMAFFRVDHGLM 450 460 470 480 490 500 910 920 930 940 950 960 mKIAA0 DSHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVIWA ..:: .. ... .:: ...:. . .:. :.. ... : . . .:.:. mKIAA1 LTYFAAFEVFFEENLPKLFAHFKKNNLTADIYL-IDWIFTLYSKSLPLDLACRIWDVF-- 510 520 530 540 550 970 980 990 1000 1010 1020 mKIAA0 ARRISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERAERHDAQEILRIARDLVH : ..:.:.. ::.... ...:. . ::: .:... : :.:.. . mKIAA1 CR--DGEEFLFRTALGILKLFEDIL--TRMDFIHSAQFLTRLPEDLPADEVFAA----IS 560 570 580 590 600 610 1030 mKIAA0 KVQMLIDNK ::: :: mKIAA1 TVQMQSRNKKWAQVLSALQKDSREMEKGSPSLRH 620 630 640 1032 residues in 1 query sequences 1767985 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:19:49 2006 done: Mon Mar 27 10:19:50 2006 Scan time: 1.080 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]