FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1466.ptfa, 921 aa vs ./tmplib.26680 library 1768096 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4992+/-0.00435; mu= 19.5021+/- 0.292 mean_var=92.4179+/-21.295, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1334 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1305 ( 1161 res) mbp09087 (1161) 173 44 0.00011 >>mKIAA1305 ( 1161 res) mbp09087 (1161 aa) initn: 297 init1: 152 opt: 173 Z-score: 176.6 bits: 44.3 E(): 0.00011 Smith-Waterman score: 360; 22.359% identity (25.419% ungapped) in 814 aa overlap (120-865:333-1116) 90 100 110 120 130 140 mKIAA1 NLGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQ----PTPKTPRQLREFL : : . :..: :.. : :. mKIAA1 LQCLSLHDPSEGTLDIDLLPVVSSPYLDVPWDGKAPCQQVLAQLAQLNIPSNFTALSFFM 310 320 330 340 350 360 150 160 170 180 190 200 mKIAA1 GTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTK : : : . ....::. : : ..:. ...:.. .:.::. : :. :. . mKIAA1 GFMDSHRDVISDYEDLVGPLHGLLKQKPDWQWNQEHEKSFLALKRALVCALCLSTPNPNL 370 380 390 400 410 420 210 220 230 240 250 260 mKIAA1 PFELFVDEKQGYAKGVLTQKLGPWRRPVAYLSKKL--DPVAAGWPPCLRMVAAIAVLTKD :: : : .: . : :. . ..:.:: :: : : . : :.: : mKIAA1 PFYLEVTVSQVSLTASLHQEHSGRKHPIAYTSKPLLPDEDSEGPQSGGDSPYAVAWALKH 430 440 450 460 470 480 270 280 290 300 310 320 mKIAA1 AGKLTMGQPLVILAPHAVEALVKQP--PDRWLSNARMTHYQAMLLDTDRVQFGPVVALNP .. . .:.:. .: .. : . .: :.: . ... .: : . . :. mKIAA1 FARCVGDNPVVLRLSYASRTTVDNEAWDSRRASKAWLIRWSLLLQDKGKRE------LEL 490 500 510 520 530 330 340 350 360 370 mKIAA1 ATLLPLPGKEPHHDCLEILAETHGTRPDLTDQPLP-DADHTWY----TDGSSFLQEGQRR . : : :.. : .. : . :::: ..: . . ..: : .. . mKIAA1 SLLQGLLGENQ-------LLTPPSSMPRVF-QPLPPSSDLSTFICVHVSGYCFYRDDELC 540 550 560 570 580 380 390 400 410 420 430 mKIAA1 AGAA--VTTETEVIWAKALPAGT-SAQRAELIALTQAL-KMAEGKKLNVY-TDSRYAFAT :: . . . : . :. . .. :.: :.. .: ....... :. : . :.. mKIAA1 AGFGLYILSPTSPPVSLAFSCSPYTTTYAHLAAVACGLERFGQSQHPVVFLTHCNWIFSV 590 600 610 620 630 640 440 450 460 470 480 mKIAA1 AHVHGEIYRRRGLLTSEGKEIKNKGEI--LALLKALFLPKRLSIIHCPGHQKGNSAEAKG ..: ::.:.:.: . . . . . : . : : : .:. .. .:. . mKIAA1 LWELLPLWRVRGFLSSDGASLPHPSLLSYIISLTSGFSP--LPFIYRTSY-RGSLFAVTV 650 660 670 680 690 700 490 500 510 520 530 mKIAA1 NRMADQAAREAAMGTDTKASSLLIETSTPYT----PDFF--HYTETDIKNL-------QE . .: :.:. ... : ... . ::. :... . ..: . .. :. mKIAA1 DTLAKQGAQGGGQWWDLP-KDVPVPMVTPHPKGRKPNLLALQLSDTTLADIIAKLQAGQK 710 720 730 740 750 760 540 550 560 570 580 mKIAA1 LGA-----------TYDREKKYWVLQGK--P---VMPDQFTFELLDFLHQLTHLSYQKMR :.. . :... ...:. : :.: :. .:. .:. .: .. mKIAA1 LSGPSPFSSAFNSLSLDQDSGLLMFKGERHPRVWVVPRQLRRDLIFSVHDSPIGEHQGLE 770 780 790 800 810 820 590 600 610 620 630 mKIAA1 ALLDR-KESPYYMLNKDKILHEVAESCQACVQVN--ASKTK-IRAGTRVRGHRPGTHWEI . .. .:.. .. .:: :. : ... : :.. .:. : . .: mKIAA1 DTYKTVRLLGWWPGMQDHV-RDYCRSCLFCIPRNLIGGELKVIESPWPLRSTAPWSSLQI 830 840 850 860 870 880 640 650 660 670 680 690 mKIAA1 DFT-KVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGT . . : . :.:..:. .:. . :::::: : : :.. ::...: :.:.: : . mKIAA1 EVVGPVTVSEEGHKHVLIVADANTRWVEAFPLKPYTHVAVAQVLLQHVFARWGVPIRLEA 890 900 910 920 930 940 700 710 720 730 740 750 mKIAA1 DNGPAFVSQVSQSVAKLLGIDWK-LHCAYR-P--QSSGQVERMNRTIKETLTKLTLATGT .:: :. .: : . :: . : : . : .:: ...:..:: . . : mKIAA1 AQGPQFARHVLVSCGLALGAQVTTLSRALQFPCLMSSEAYWEFKRALKEFI----FLYGK 950 960 970 980 990 760 770 780 790 800 mKIAA1 RDWVLLLPLA--LYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQ . :. ::: .:: .: . ::...: :. :.. :::. .: .:. mKIAA1 K-WAASLPLLHLAFRASTTEA----TPFQVLTGGEMKLMEPVWWEMSR-ANIEGLKMDAF 1000 1010 1020 1030 1040 1050 810 820 830 840 850 860 mKIAA1 ALQAVQREV----W----KPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKG :: ..::. : : : . .. . . . ::: : . .. .: : mKIAA1 LLQ-LMRELLDLHWRVAEKASEKAENRRFKRESQENEWSVGDQVLLLSLPRNGSSAKWMG 1060 1070 1080 1090 1100 1110 870 880 890 900 910 920 mKIAA1 PYTVLLTTPTALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP :. . mKIAA1 PFYIGDRLSLSLYRVWGFPVPDKLGCVYPSSLMKAFPKHDTPLSLDVEQ 1120 1130 1140 1150 1160 921 residues in 1 query sequences 1768096 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:45:52 2006 done: Mon Mar 27 10:45:53 2006 Scan time: 0.960 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]