# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg06319.fasta.nr -Q ../query/mKIAA1466.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1466, 921 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7836078 sequences Expectation_n fit: rho(ln(x))= 5.5210+/-0.000189; mu= 12.8692+/- 0.011 mean_var=118.6114+/-26.218, 0's: 28 Z-trim: 423 B-trim: 3407 in 1/66 Lambda= 0.117764 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|11078529|gb|AAG29093.1|AF221065_1 putative gag- (1733) 5801 997.8 0 gi|121104178|gb|ABM47428.1| putative gag-pro-pol p (1733) 5795 996.8 0 gi|82582297|gb|ABB83225.1| putative gag-pro-pol po (1733) 5789 995.8 0 gi|88765819|gb|ABD49687.1| putative gag-pro-pol po (1733) 5789 995.8 0 gi|82582301|gb|ABB83228.1| putative gag-pro-pol po (1733) 5775 993.4 0 gi|130645|sp|P11227.1|POL_MLVRD RecName: Full=Pol (1196) 5764 991.4 0 gi|5881091|gb|AAD55051.1| putative gag-pol polypro (1734) 5763 991.4 0 gi|535518|gb|AAA92679.1| gag-pol polyprotein (1736) 5755 990.0 0 gi|86651866|gb|ABD14433.1| gag-pro-pol polyprotein (1734) 5725 984.9 0 gi|86651894|gb|ABD14439.1| gag-pro-pol polyprotein (1734) 5725 984.9 0 gi|13959690|sp|P03356.2|POL_MLVAV RecName: Full=Po (1196) 5722 984.2 0 gi|86651882|gb|ABD14436.1| gag-pro-pol polyprotein (1734) 5722 984.4 0 gi|331995|gb|AAB03091.1| gag-pol polyprotein (tag (1734) 5722 984.4 0 gi|927201|gb|AAA79247.1| putative reverse transcri (1038) 5712 982.4 0 gi|1498648|gb|AAB06450.1| Gag-Pol polyprotein (1734) 5714 983.0 0 gi|30908471|gb|AAP37287.1| gag-pol polyprotein [Mu (1734) 5704 981.3 0 gi|13940448|gb|AAK50381.1|U43202_2 pol precursor p (1196) 5701 980.7 0 gi|2281588|gb|AAB64160.1| Pol [synthetic construct (1199) 5690 978.8 0 gi|1346748|sp|P03355.2|POL_MLVMO RecName: Full=Pol (1199) 5683 977.6 0 gi|2801471|gb|AAC82568.1| Pr180 [Moloney murine le (1737) 5683 977.8 0 gi|4071076|gb|AAC98548.1| pol polypeptide [Murine (1204) 5676 976.4 0 gi|223354|prf||0711245A protein gag/pol/env (2514) 5675 976.6 0 gi|28892671|gb|AAO61197.1|AF411814_3 Gag-Pro-Pol p (1736) 5672 975.9 0 gi|18448744|gb|AAL69910.1|AF462057_3 Pr180 gag-pro (1738) 5672 975.9 0 gi|156153244|gb|ABU54795.1| gag-pro-pol polyprotei (1736) 5666 974.9 0 gi|156153250|gb|ABU54793.1| gag-pro-pol polyprotei (1736) 5666 974.9 0 gi|156153242|gb|ABU54794.1| gag-pro-pol polyprotei (1736) 5665 974.7 0 gi|53749060|dbj|BAD52413.1| POL polyprotein precur (1199) 5658 973.3 0 gi|53749064|dbj|BAD52416.1| POL polyprotein precur (1199) 5647 971.5 0 gi|130642|sp|P26809.1|POL_MLVFF RecName: Full=Pol (1204) 5630 968.6 0 gi|2228759|gb|AAB86912.1| Pol [Rauscher murine leu (1204) 5629 968.4 0 gi|130643|sp|P26808.1|POL_MLVFP RecName: Full=Pol (1204) 5622 967.2 0 gi|4959869|gb|AAD34536.1| polymerase [Murine leuke (1180) 5620 966.9 0 gi|130641|sp|P26810.1|POL_MLVF5 RecName: Full=Pol (1204) 5606 964.5 0 gi|55979254|gb|AAV68488.1| gag-pol polyprotein [Mu (1736) 5604 964.4 0 gi|2351212|dbj|BAA22064.1| gag-pol polyprotein (pr (1738) 5597 963.2 0 gi|63028017|gb|AAY27069.1| truncated polyprotein [ (1674) 5427 934.3 0 gi|154761384|gb|ABS85542.1| putative gag-pro-pol p (1618) 5072 873.9 0 gi|28827198|gb|AAO46152.1| pol protein [Recombinan (1204) 4931 849.8 0 gi|28827195|gb|AAO46150.1| pol protein [Recombinan (1204) 4774 823.2 0 gi|28827201|gb|AAO46154.1| pol protein [Recombinan (1204) 4755 819.9 0 gi|40796124|ref|NP_955577.1| pol gene polyprotein (1210) 4720 814.0 0 gi|3420023|gb|AAC31801.1| gag-pol precursor polypr (1786) 4720 814.2 0 gi|1237256|gb|AAA93092.1| gag-pol precursor polypr (1784) 4624 797.9 0 gi|199851|gb|AAA39757.1| pol protein ( 707) 4320 745.8 1.6e-212 gi|130585|sp|P10272.1|POL_BAEVM RecName: Full=Pol (1189) 4149 717.0 1.3e-203 gi|154243367|gb|ABS71856.1| gag-pol precursor poly (1739) 4150 717.3 1.5e-203 gi|6723273|dbj|BAA89659.1| gag-pol precursor polyp (1727) 4149 717.2 1.6e-203 gi|151429074|gb|ABS12072.1| Gag-Pol polyprotein [R (1740) 4141 715.8 4.2e-203 gi|400821|sp|P31792.1|POL_FENV1 RecName: Full=Pol (1046) 4116 711.3 5.8e-202 >>gi|11078529|gb|AAG29093.1|AF221065_1 putative gag-pro- (1733 aa) initn: 5687 init1: 5687 opt: 5801 Z-score: 5326.8 bits: 997.8 E(): 0 Smith-Waterman score: 5801; 93.051% identity (97.177% similar) in 921 aa overlap (1-921:817-1733) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::: ::::::::::::: gi|110 PNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN ::::::::::::::::::::::::::::::::::::.:::::::::::::::::: :::: gi|110 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::.:::::::::::::::::::: ::::::::::::::::::::::::::: gi|110 LGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|110 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|110 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAARWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|110 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEK 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA :::::::::::::::::::::.::::::::::::::::::::.:::::::::::::: gi|110 GAPHDCLEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|110 RALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::::::::::::::.:::::::::::::. :. ..:. gi|110 EIKNKSEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAIRTSPETST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: ::::::. :::::::.: :.::::::.. : ::::::::::::::.::::: ::. gi|110 LLIEDSTPYTPSHFHYTETDLKRLRELGATYNQIKGYWVLQGKPVMPDQFVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::: :::.:::::.::::::::.:. :. ::::: ::.::::::.:: ::.:.::::: gi|110 LTHLSPQKMKALLDREESPYYMLNRDRTLQYVAESCTACAQVNASKAKIGAGVRIRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::::::.::::::::::::::::::::::::::::.::::.:::::::::::::::: gi|110 GTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEEIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.:::::::::::.::: :::::::::::::::::::::::::::::::::::::.: gi|110 QVLGSDNGPAFVSQVSHSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|110 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|110 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::::::: ::::::::::::::::::: gi|110 TALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|121104178|gb|ABM47428.1| putative gag-pro-pol polyp (1733 aa) initn: 5681 init1: 5681 opt: 5795 Z-score: 5321.3 bits: 996.8 E(): 0 Smith-Waterman score: 5795; 92.725% identity (97.177% similar) in 921 aa overlap (1-921:817-1733) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::::::::::::::::: gi|121 PNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN :::::::::::::::::::::::::::::::::::::::::::: :::.::::::::::: gi|121 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|121 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|121 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|121 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|121 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEK 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA : :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::: gi|121 EAPHDCLEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|121 RALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::::::::::::::.:::::::::::::: . ..:. gi|121 EIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: :::::::.: :.::::::.. : ::::::::::::: .::::: ::. gi|121 LLIEDSTPYTPPHFHYTETDLKRLRELGATYNQTKGYWVLQGKPVMPDQSVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::: :::.:::::.::::::::.:. .. :.:.: ::.::::::.:: ::.::::::: gi|121 LTHLSPQKMKALLDREESPYYMLNRDRTIQYVTETCTACAQVNASKAKIGAGVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::.:::.::::::::::::::::::::::::::::.::::.:.:::::.:::::::: gi|121 GTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: :::::::::::::::::::::::::::::::::::::.: gi|121 QVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|121 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::.:::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|121 LQAVQQEVWKPLAAAYQDQLDQPVIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::::::: ::::::::::::::::::: gi|121 TALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|82582297|gb|ABB83225.1| putative gag-pro-pol polypr (1733 aa) initn: 5675 init1: 5675 opt: 5789 Z-score: 5315.8 bits: 995.8 E(): 0 Smith-Waterman score: 5789; 92.725% identity (97.068% similar) in 921 aa overlap (1-921:817-1733) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::::::::::::::::: gi|825 PNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN :::::::::::::::::::::::::::::::::::::::::::: :::.::::::::::: gi|825 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|825 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|825 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEK 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA : :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::: gi|825 EAPHDCLEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|825 RALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::::::::::::::.:::::::::::::: . ..:. gi|825 EIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: :::::::.: :.::::::.. : ::::::::::::: .::::: ::. gi|825 LLIEDSTPYTPPHFHYTETDLKRLRELGATYNQTKGYWVLQGKPVMPDQSVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::: : :::.:::::.::::::::.:. .. :.:.: ::.::::::.:: ::.::::::: gi|825 LTHPSPQKMKALLDREESPYYMLNRDRTIQYVTETCTACAQVNASKAKIGAGVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::.:::.::::::::::::::::::::::::::::.::::.:::::::.:::::::: gi|825 GTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEDIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: :::::::::::::::::::::::::::::::::::::.: gi|825 QVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|825 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::.:::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|825 LQAVQQEVWKPLAAAYQDQLDQPVIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::::::: ::::::::::::::::::: gi|825 TALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|88765819|gb|ABD49687.1| putative gag-pro-pol polypr (1733 aa) initn: 5675 init1: 5675 opt: 5789 Z-score: 5315.8 bits: 995.8 E(): 0 Smith-Waterman score: 5789; 92.617% identity (97.177% similar) in 921 aa overlap (1-921:817-1733) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::::::::::::::::: gi|887 PNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN :::::::::::::::::::::::::::::::::::::::::::: :::.::::::::::: gi|887 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|887 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|887 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|887 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKNAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|887 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEK 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA : :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::: gi|887 EAPHDCLEILAETHGTRPDLTDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|887 RALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::::::::::::::.:::::::::::::: . ..:. gi|887 EIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: :::::::.: :.::::::.. : ::::::::::::: .::::: ::. gi|887 LLIEDSTPYTPPHFHYTETDLKRLRELGATYNQTKGYWVLQGKPVMPDQSVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::: :::.:::::.::::::::.:. .. :.:.: ::.::::::.:: ::.::::::: gi|887 LTHLSPQKMKALLDREESPYYMLNRDRTIQYVTETCTACAQVNASKAKIGAGVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::.:::.::::::::::::::::::::::::::::.::::.:.:::::.:::::::: gi|887 GTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: :::::::::::::::::::::::::::::::::::::.: gi|887 QVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|887 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::.:::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|887 LQAVQQEVWKPLAAAYQDQLDQPVIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::::::: ::::::::::::::::::: gi|887 TALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|82582301|gb|ABB83228.1| putative gag-pro-pol polypr (1733 aa) initn: 5661 init1: 5661 opt: 5775 Z-score: 5303.0 bits: 993.4 E(): 0 Smith-Waterman score: 5775; 92.400% identity (97.068% similar) in 921 aa overlap (1-921:817-1733) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::::::::::::::::: gi|825 PNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN :::::::::::::::::::::::::::::::::::::::::::: :::.::::::::::: gi|825 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSEQDCQRGTRALLQTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|825 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|825 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : gi|825 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEK 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA : :::::::::::::::::::::.::::.::::::.::::::::::::::::::::::. gi|825 EAPHDCLEILAETHGTRPDLTDQPIPDADYTWYTDGGSFLQEGQRRAGAAVTTETEVIWG 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|825 GVLPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::::::::::::::.:::::::::::::: . ..:. gi|825 EIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLETST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: :::::::.: :.::::::.. : ::::::::::::: .::::: ::. gi|825 LLIEDSTPYTPPHFHYTETDLKRLRELGATYNQTKGYWVLQGKPVMPDQSVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::: :::.:::::.::::::::.:. .. :.:.: ::.::::::.:: ::.::::::: gi|825 LTHLSPQKMKALLDREESPYYMLNRDRTIQYVTETCTACAQVNASKAKIGAGVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::.:::.::::::::::::::::::::::::::::.::::.:.:::::.:::::::: gi|825 GTHWEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: :::::::::::::::::::::::::::::::::::::.: gi|825 QVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|825 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKLTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::.:::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|825 LQAVQQEVWKPLAAAYQDQLDQPVIPHPFRVGDAVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::::::: ::::::::::::::::::: gi|825 TALKVDGISAWIHAAHVKAATTPPAGTA----WKVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|130645|sp|P11227.1|POL_MLVRD RecName: Full=Pol poly (1196 aa) initn: 5772 init1: 5645 opt: 5764 Z-score: 5294.8 bits: 991.4 E(): 0 Smith-Waterman score: 5764; 92.291% identity (96.743% similar) in 921 aa overlap (1-921:280-1196) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::: ::::: ::::::::::::: gi|130 PNPYNLLSGLPTSHRWYTVLDLKDAFFCLRLHPTSQPLFASEWRDPGMGISGQLTWTRLP 250 260 270 280 290 300 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN :::::::::::::::: ::::::::::::::::::::::::::::::::::::::.:::: gi|130 QGFKNSPTLFDEALHRGLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLKTLGN 310 320 330 340 350 360 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF ::::::::::::::::::::::::.::::::: ::::::::::::::::::::::::::: gi|130 LGYRASAKKAQICQKQVKYLGYLLREGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 370 380 390 400 410 420 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::: ::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|130 CRLWIPRFAEMAAPLYPLTKTGTLFNWGPDQQKAYHEIKQALLTAPALGLPDLTKPFELF 430 440 450 460 470 480 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 490 500 510 520 530 540 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . gi|130 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEE 550 560 570 580 590 600 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA :::::::::::::.:::::::.::::::::::::::::::::.:::::::::::::: gi|130 GAPHDCLEILAETHGTEPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWA 610 620 630 640 650 660 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::.:::::::::::::::.:::::.:::::::::. gi|130 RALPAGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYKRRGLLTSEGR 670 680 690 700 710 720 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::: :::::.::::.:::.:::::::::. : .:. gi|130 EIKNKSEILALLKALFLPKRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKTPPDTST 730 740 750 760 770 780 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: .:::::::.:.:.::::::.. : :::.::::::::::.::::: ::. gi|130 LLIEDSTPYTPAYFHYTETDLKKLRELGATYNQSKGYWVFQGKPVMPDQFVFELLDSLHR 790 800 810 820 830 840 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::.::::.::::: ::::::::.:: :. ::.:: .:.::::::.:: ::.::::::: gi|130 LTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRP 850 860 870 880 890 900 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 GTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP 910 920 930 940 950 960 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG 970 980 990 1000 1010 1020 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA 1030 1040 1050 1060 1070 1080 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP 1090 1100 1110 1120 1130 1140 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::: :.:.::::::::::::::::: gi|130 TALKVDGISAWIHAAHVKAATTPPI----RPSWRVQRSQNPLKIRLTRGAP 1150 1160 1170 1180 1190 >>gi|5881091|gb|AAD55051.1| putative gag-pol polyprotein (1734 aa) initn: 5770 init1: 5643 opt: 5763 Z-score: 5292.0 bits: 991.4 E(): 0 Smith-Waterman score: 5763; 91.748% identity (96.851% similar) in 921 aa overlap (1-921:818-1734) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::: ::::::::::::: gi|588 PNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN ::::::::::::::::::::::::::::::::::::.:::::::::::::::::: :::: gi|588 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::.:::::::::::::::::::: ::::::::::::::::::::::::::: gi|588 LGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|588 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|588 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . gi|588 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEE 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA :::::::::::::::::::::.::::::::::::::::::::.:::::::::::::: gi|588 GAPHDCLEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::.:::::::::::::::.:::::::::::::::. gi|588 RALPAGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::: :::::.::::.:::.:::::::::. : .:. gi|588 EIKNKSEILALLKALFLPKRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKTPPDTST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: .:::::::.:.:.::::::.. : :::.::::::::::.::::: ::. gi|588 LLIEDSTPYTPAYFHYTETDLKKLRELGATYNQSKGYWVFQGKPVMPDQFVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::.::::.::::: ::::::::.:: :. ::.:: .:.::::::.:: ::.::::::: gi|588 LTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :.:::::::.::::::::::::::::::::::::::::.:::..:.:::::::::::::: gi|588 GSHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: :::::::::::::::::::::::::::::::::::::.: gi|588 QVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|588 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|588 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDSVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::: :.:.::::::::::::::::: gi|588 TALKVDGISAWIHAAHVKAATTPPI----KPSWRVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|535518|gb|AAA92679.1| gag-pol polyprotein (1736 aa) initn: 3390 init1: 3390 opt: 5755 Z-score: 5284.6 bits: 990.0 E(): 0 Smith-Waterman score: 5755; 92.074% identity (97.177% similar) in 921 aa overlap (1-921:818-1736) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::::::::::::::::: gi|535 PNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|535 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGD 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF ::::::::::::::::::::::::.::::::: ::::::::::.:::::::::::::::: gi|535 LGYRASAKKAQICQKQVKYLGYLLREGQRWLTEARKETVMGQPVPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|535 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::. ::::::::::::::::::::::::::::::::::::::::::::::::: gi|535 VDEKQGYAKA-LTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . gi|535 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEE 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA :::::::::::::::::::::.::::::::::::::::::::.:::::::::::::: gi|535 GAPHDCLEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::: ::::::::::::::::.:::::::::::::::.:::::::::::::::. gi|535 RALPAGTSAQPAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.::::::::::::.::::::: :::::.::::.:::.:::::::::. : .:. gi|535 EIKNKNEILALLKALFLPRRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKTPPDTST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: .:::::::.:.:.::::::.. : :::.::::::::::.::::: ::. gi|535 LLIEDSTPYTPAYFHYTETDLKKLRELGATYNQSKGYWVFQGKPVMPDQFVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::.::::.::::: .:::::::.:: :. ::.:: .:.::::::.:: . .::::::: gi|535 LTHLGYQKMKALLDRGKSPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGTRVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::::::.::::::::::::::::::::::::::::.:::..:.:::::::::::::: gi|535 GTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: ::::::::::::::::::::::::::::::::::::::: gi|535 QVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|535 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPP-LVNFHDPEMSKFTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|535 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP :::::::::::::::::::.::::: ::::::::::::::::::::::::: gi|535 TALKVDGIAAWIHAAHVKAGTTPPARTASGPTWKVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|86651866|gb|ABD14433.1| gag-pro-pol polyprotein [Mu (1734 aa) initn: 5732 init1: 5605 opt: 5725 Z-score: 5257.1 bits: 984.9 E(): 0 Smith-Waterman score: 5725; 90.879% identity (96.743% similar) in 921 aa overlap (1-921:818-1734) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::: ::::::::::::: gi|866 PNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN ::::::::::::::::::::::::::::::::::::.:::::::::::::::::: :::: gi|866 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::.:::::::::::::::::::: ::::::::::::::::::::::::::: gi|866 LGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|866 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|866 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . gi|866 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEE 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA :::::::::::::::::::::.::::::::::::::::::::.:::::::::::::: gi|866 GAPHDCLEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::.:::::::::::::::.:::::::::::::::. gi|866 RALPAGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::: :::::.::::.:::.:::::::::. : .:. gi|866 EIKNKSEILALLKALFLPKRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKTPPDTST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: .:::::::.:.:.::::::.. : :::.::::::::::.::::: ::. gi|866 LLIEDSTPYTPAYFHYTETDLKKLRELGATYNQSKGYWVFQGKPVMPDQFVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::.::::.::::: ::::::::.:: :. ::.:: .:.::::::.:: ::.::::::: gi|866 LTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::::::.::::::::::::::::::::::::::::.:::..:.:::::::::::::: gi|866 GTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: :::::::::::::::::::::::::::::::::::::.: gi|866 QVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::.::..:::::::::::: gi|866 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP ::.::::.::::: ::.:.:::::::::::.::.:::::::::::::::::::::::::: gi|866 LQTVQREIWKPLAEAYRDRLDQPVIPHPFRIGDSVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::: :.:.::::::::::::::::: gi|866 TALKVDGISAWIHAAHVKAATTPPI----KPSWRVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 >>gi|86651894|gb|ABD14439.1| gag-pro-pol polyprotein [Mu (1734 aa) initn: 5732 init1: 5605 opt: 5725 Z-score: 5257.1 bits: 984.9 E(): 0 Smith-Waterman score: 5725; 90.879% identity (96.743% similar) in 921 aa overlap (1-921:818-1734) 10 20 30 mKIAA1 LHPTSQPLFAFEWRDPEMGISGQLTWTRLP :::::::::::::::: ::::::::::::: gi|866 PNPYNLLSGLPPSHRWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGMGISGQLTWTRLP 790 800 810 820 830 840 40 50 60 70 80 90 mKIAA1 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGN ::::::::::::::::::::::::::::::::::::.:::::::::::::::::: :::: gi|866 QGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGN 850 860 870 880 890 900 100 110 120 130 140 150 mKIAA1 LGYRASAKKAQICQKQVKYLGYLLKEGQRWLTGARKETVMGQPTPKTPRQLREFLGTAGF :::::::::::.:::::::::::::::::::: ::::::::::::::::::::::::::: gi|866 LGYRASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGF 910 920 930 940 950 960 160 170 180 190 200 210 mKIAA1 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|866 CRLWIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF 970 980 990 1000 1010 1020 220 230 240 250 260 270 mKIAA1 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|866 VDEKQGYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMG 1030 1040 1050 1060 1070 1080 280 290 300 310 320 330 mKIAA1 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . gi|866 QPLVILAPHAVEALVKQPPDRWLSNARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEE 1090 1100 1110 1120 1130 1140 340 350 360 370 380 390 mKIAA1 EPHHDCLEILAETHGTRPDLTDQPLPDADHTWYTDGSSFLQEGQRRAGAAVTTETEVIWA :::::::::::::::::::::.::::::::::::::::::::.:::::::::::::: gi|866 GAPHDCLEILAETHGTRPDLTDQPIPDADHTWYTDGSSFLQEGQRKAGAAVTTETEVIWA 1150 1160 1170 1180 1190 1200 400 410 420 430 440 450 mKIAA1 KALPAGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHGEIYRRRGLLTSEGK .::::::::::::::::::::::::::.:::::::::::::::.:::::::::::::::. gi|866 RALPAGTSAQRAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGR 1210 1220 1230 1240 1250 1260 460 470 480 490 500 510 mKIAA1 EIKNKGEILALLKALFLPKRLSIIHCPGHQKGNSAEAKGNRMADQAAREAAMGTDTKASS :::::.:::::::::::::::::::: :::::.::::.:::.:::::::::. : .:. gi|866 EIKNKSEILALLKALFLPKRLSIIHCLGHQKGDSAEARGNRLADQAAREAAIKTPPDTST 1270 1280 1290 1300 1310 1320 520 530 540 550 560 570 mKIAA1 LLIETSTPYTPDFFHYTETDIKNLQELGATYDREKKYWVLQGKPVMPDQFTFELLDFLHQ :::: :::::: .:::::::.:.:.::::::.. : :::.::::::::::.::::: ::. gi|866 LLIEDSTPYTPAYFHYTETDLKKLRELGATYNQSKGYWVFQGKPVMPDQFVFELLDSLHR 1330 1340 1350 1360 1370 1380 580 590 600 610 620 630 mKIAA1 LTHLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKIRAGTRVRGHRP ::::.::::.::::: ::::::::.:: :. ::.:: .:.::::::.:: ::.::::::: gi|866 LTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVRVRGHRP 1390 1400 1410 1420 1430 1440 640 650 660 670 680 690 mKIAA1 GTHWEIDFTKVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP :::::::::.::::::::::::::::::::::::::::.:::..:.:::::::::::::: gi|866 GTHWEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMP 1450 1460 1470 1480 1490 1500 700 710 720 730 740 750 mKIAA1 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG ::::.::::::.:::::::: :::::::::::::::::::::::::::::::::::::.: gi|866 QVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAG 1510 1520 1530 1540 1550 1560 760 770 780 790 800 810 mKIAA1 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPEMSKFTNSPSLQAHLQA :::::::::::::::::::::::::::::::::::::::::::.::..:::::::::::: gi|866 TRDWVLLLPLALYRARNTPGPHGLTPYEILYGAPPPLVNFHDPDMSELTNSPSLQAHLQA 1570 1580 1590 1600 1610 1620 820 830 840 850 860 870 mKIAA1 LQAVQREVWKPLAAAYQDQLDQPVIPHPFRVGDTVWVRRHQTKNLEPRWKGPYTVLLTTP ::.::::.::::: ::.:.:::::::::::.::.:::::::::::::::::::::::::: gi|866 LQTVQREIWKPLAEAYRDRLDQPVIPHPFRIGDSVWVRRHQTKNLEPRWKGPYTVLLTTP 1630 1640 1650 1660 1670 1680 880 890 900 910 920 mKIAA1 TALKVDGIAAWIHAAHVKAATTPPAGTASGPTWKVQRSQNPLKIRLTRGAP ::::::::.::::::::::::::: :.:.::::::::::::::::: gi|866 TALKVDGISAWIHAAHVKAATTPPI----KPSWRVQRSQNPLKIRLTRGAP 1690 1700 1710 1720 1730 921 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 10:14:27 2009 done: Sat Mar 14 10:23:12 2009 Total Scan time: 1145.910 Total Display time: 0.630 Function used was FASTA [version 34.26.5 April 26, 2007]