FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4224.ptfa, 568 aa vs ./tmplib.26680 library 1768449 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.9932+/-0.00845; mu= -6.0463+/- 0.562 mean_var=360.8183+/-85.855, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.0675 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4120 ( 706 res) mfj20275 ( 706) 695 81 2.8e-16 >>mKIAA4120 ( 706 res) mfj20275 (706 aa) initn: 614 init1: 371 opt: 695 Z-score: 384.6 bits: 81.3 E(): 2.8e-16 Smith-Waterman score: 784; 32.184% identity (41.252% ungapped) in 696 aa overlap (17-568:20-706) 10 20 30 40 50 mKIAA4 GADAARSLTGLAFREMRGQGRGHARWPAPLRSLLRAFGPQDTTTGGLEQDEMDQTPP :: : : . : .:. . : .: . . :: : : mKIAA4 LEPGGQRPGRISGRKCWGTRG-GSGDLETTPSLPTLVSS-GMEDPSEEA-EQPSGD--PG 10 20 30 40 50 60 70 80 90 100 110 mKIAA4 ARSEPLVSGIRTPPVRRNSKLATLGRIFKPWKWRKKKN-EKLKQTTSALEKKMAGRQGRE . . .: :::..:.::...::.:::::::::::. .:.:.:. : .:. .. mKIAA4 MGMDSVEAGDTTPPTKRKSKFSALGKIFKPWKWRKKKSSDKFKETSEDGED--SGKLSHA 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA4 ELIKQGLLEMMEQDSENKACSPKEGSQPVQSEPPAGE-QETLTSEGAQPGSPSASGTDQV : . . : . . .: . ... : : .. : : :.::.: . : ... mKIAA4 ALKNGHTTPIGSARSSSPVLVEEEPERSLRNLTPEEESKKRLGSTGSQPNSEAEPGPEHA 120 130 140 150 160 170 180 190 200 210 220 mKIAA4 SQDELLSSDAHLDDTAN---IPSASTAEEADA--GSLLPT-------TD--EPSQALAGS .. :: :... . .:..:::. ... :: : :: . ....: mKIAA4 PKQPLLPPKRPLSSSCEAKEVPAGSTARSVSSTSGSTTVTSAATTAATDMTKTVKSFVGP 180 190 200 210 220 230 230 240 250 260 mKIAA4 DSLDSP-PRSLE------RSVSQLPSPPLLPT-PPPKASSKATKNVTGQ--AALFQG--- .: ::.: ... .: : :::: ... .. . .. :. .: mKIAA4 TPAPAPAPRTLPAAPASANTAATTTAPAKQPPIPPPKPAQRNSNPIIAELSQAMNSGTVL 240 250 260 270 280 290 270 280 mKIAA4 --PS-------------MKNNEPA-------------------LRGQLATPTGSP----- :: . . ::: :. : : .:: mKIAA4 SKPSPPLPPKRGIPSTSIPSLEPAASFTTKTANDQREKTVSLCLEPPLIIPPSSPSPPLP 300 310 320 330 340 350 290 300 310 320 330 mKIAA4 -HVTTV--HRPLPPSR---VMEELHRALATKHRQDSFQGRECRGS-PKKRMD-------- :. . :: :.. .. :.. . .. :: : .. . ::: .: mKIAA4 THIPPEPPRSPLVPAKTFQIVPEVEFSSSSDLFQDISQQEDQKTEVPKKIQDQSFGESHI 360 370 380 390 400 410 340 350 360 mKIAA4 ----------VRLSR--TSSME-----RGKERDEAWSF---DGASENKWTATK------- .:... :: . .: .: .. : :. ::. : . mKIAA4 PSRLPPLPLHIRIQQALTSPLPVTPPLEGTHRAHSLLFENSDSFSEDTGTLGRTRSLPIT 420 430 440 450 460 470 370 380 390 mKIAA4 -------DSEENKEN-----------------LMLSSELKDD------MLLYQDEEALND :.::.... : : : :.. . :.::: .: mKIAA4 IEMLKVPDDEEEEQTCPFVEDVTSTSATPSLPLCLREEEKESDSDSEGPIKYRDEEEDDD 480 490 500 510 520 530 400 410 420 430 440 450 mKIAA4 ---SIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEIRQQIEMKL-SK : :. : .:. ::.:: .:::. : . : .::.. :: .:::.:: : . mKIAA4 DDESHQSALANRVKRKDTLAMKLSSRPSEPET-NLNSWPRKSKEEWNEIRHQIGNTLIRR 540 550 560 570 580 590 460 470 480 490 500 510 mKIAA4 LSQRPAVEELERRNILKQRNDQTEQEERREIKQRLTRKLNQRPTVDELRDRKILIRFSDY :::::..::::.::::. .:. .: :.::::.::::::.::::: :: :::: ::..: mKIAA4 LSQRPTAEELEQRNILQPKNEADRQAEKREIKRRLTRKLSQRPTVAELLARKIL-RFNEY 600 610 620 630 640 650 520 530 540 550 560 mKIAA4 VEVARAQDYDRRADKPWTRLSAADKAAIRKELNEYKSNEMEVHASSKHLTRFHRP :::. :.:::::::::::.:. ::::::::::::.::.:::::..:::.::.::: mKIAA4 VEVTDAHDYDRRADKPWTKLTPADKAAIRKELNEFKSSEMEVHVDSKHFTRYHRP 660 670 680 690 700 568 residues in 1 query sequences 1768449 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:05:39 2006 done: Mon Mar 27 11:05:40 2006 Scan time: 0.790 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]