FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1072.ptfa, 665 aa vs ./tmplib.26680 library 1768352 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.5255+/-0.0059; mu= 4.2018+/- 0.392 mean_var=186.2488+/-44.525, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.0940 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0015 ( 313 res) mpm11170 ( 313) 1066 157 3.3e-39 mKIAA4175 ( 360 res) mfj00074 ( 360) 314 55 1.8e-08 >>mKIAA0015 ( 313 res) mpm11170 (313 aa) initn: 1065 init1: 1065 opt: 1066 Z-score: 796.3 bits: 156.6 E(): 3.3e-39 Smith-Waterman score: 1067; 56.026% identity (58.503% ungapped) in 307 aa overlap (134-436:3-300) 110 120 130 140 150 160 mKIAA1 EGTVEIETVKLARSVFSKLHEICCSWVKDFPLR-RRPQIYYETSIHAIKNMRRKMEDKHV :: . :: . .:::::.: ::::::.:: mKIAA0 QVPLTAQAPQWQWLVSIHAIRNTRRKMEDRHV 10 20 30 170 180 190 200 210 220 mKIAA1 CIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDPAEALCRA .: :: ::.: :. ..::::::::::::::: :::::.:.: .: . .:: :: .: mKIAA0 SLPAFNHLFGLSDSVHRAYFAVFDGHGGVDAARYASVHVHTNASHQPELRTNPAAALKEA 40 50 60 70 80 90 230 240 250 260 270 280 mKIAA1 FRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKP ::.::: :.::: :: :. ::::: ..: : :::::.:::::.::..:..:.::.:::: mKIAA0 FRLTDEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQGRVVKLMEPHKP 100 110 120 130 140 150 290 300 310 320 330 340 mKIAA1 DREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDY .:.::: ::::::: : . :::::.:.:::::::. .:::. :.::.:: : :.::: mKIAA0 ERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDY 160 170 180 190 200 210 350 360 370 380 390 400 mKIAA1 LILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLR :.::::::.:.: :.. .: :: ...:.. .:..::: ::: :: :::::.::::: mKIAA0 LLLACDGFFDVVPHHEVTGLVHGHLLRHKGNGMRIAEELVAVARDRGSHDNITVMVVFLR 220 230 240 250 260 270 410 420 430 440 450 mKIAA1 DMNKAVNVSEESEWTENSFQG---GQEDGGDDKETHGECKRPWPQHQCSAPADLGYEGRV : : :.. :: .: : :.. . : mKIAA0 ---------EPLELLEGGVQGTGDAQADVGSQDLSTGLSELEISNTSQRS 280 290 300 310 460 470 480 490 500 510 mKIAA1 DSFTDRTSLSPGPQINVLEDPDYLDLTQIEASKPHSTQFLPPVEMIGPGAPKKDLNELIM >>mKIAA4175 ( 360 res) mfj00074 (360 aa) initn: 388 init1: 152 opt: 314 Z-score: 244.5 bits: 54.7 E(): 1.8e-08 Smith-Waterman score: 401; 31.655% identity (34.921% ungapped) in 278 aa overlap (143-406:91-356) 120 130 140 150 160 170 mKIAA1 KLARSVFSKLHEICCSWVKDFPLRRRPQIYYETSIHAIKNMRRKMEDKHVCIPDFNMLFN .......:.. : .:::. :..: . mKIAA4 GKVAEIMQNDRLGGLDVLEAEFSKTWEFKSHNVAVYSIQGRRDHMEDR------FEVLTD 70 80 90 100 110 180 190 200 210 220 230 mKIAA1 LEDQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDP-AEALCRAFRVTDERFV : .. . . :..:::::: :: :.. .: : .:.. .. : .... :. . mKIAA4 LANKTHPSIFGIFDGHGGETAAEYVKSRLPEAL-KQHLQDYEKDKENSVLTYQTILEQQI 120 130 140 150 160 170 240 250 260 270 280 mKIAA1 QKAARESL--------RCGTTGVVTFIRGNMLHVAWVGDSQVMLVRK-GQAVELMKPHKP . :: : . ::: ..... . : :: ::::. .: : :.:. : . ::: mKIAA4 LSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKP 180 190 200 210 220 230 290 300 310 320 330 340 mKIAA1 DREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKP--YICGDADSASTVLDGTE . :..::. :: . . :.:::.: :..::..:: : . : : . :: . mKIAA4 YQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQ 240 250 260 270 280 290 350 360 370 380 390 mKIAA1 -DYLILACDGFYDTVNPDEAVKVVSDHLKENN-GDSSMVAHKLVASARDAGSSDNITVIV ...::: ::..:. . .:::. ....: : . : .:.: ... : :::::.: mKIAA4 PEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSIVLQSFYR-----GCPDNITVMV 300 310 320 330 340 400 410 420 430 440 450 mKIAA1 VFLRDMNKAVNVSEESEWTENSFQGGQEDGGDDKETHGECKRPWPQHQCSAPADLGYEGR : .:. .:. mKIAA4 VKFRNSSKTEEH 350 360 665 residues in 1 query sequences 1768352 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:23 2006 done: Mon Mar 27 10:35:24 2006 Scan time: 0.780 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]