FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA0953.ptfa, 657 aa
vs ./tmplib.26680 library
1768360 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 5.9932+/-0.00421; mu= 8.8483+/- 0.280
mean_var=101.3780+/-23.122, 0's: 0 Z-trim: 2 B-trim: 25 in 1/35
Lambda= 0.1274
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 38, opt: 26, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA0143 ( 832 res) mph02435 ( 832) 1847 350 4.2e-97
>>mKIAA0143 ( 832 res) mph02435 (832 aa)
initn: 1686 init1: 726 opt: 1847 Z-score: 1835.6 bits: 350.3 E(): 4.2e-97
Smith-Waterman score: 2507; 56.392% identity (60.611% ungapped) in 704 aa overlap (1-657:131-832)
10 20 30
mKIAA0 LGTNSFVKFANIEEDTPSYHRSYDFFVSRF
::::::::::::::::::::: ::::::::
mKIAA0 CHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRF
110 120 130 140 150 160
40 50 60 70 80 90
mKIAA0 SEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQH
: :::: :.: ::.:.::..::.:.::::::::::::.:.::.::::::::::::::.:.
mKIAA0 SAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDELRATIWEPQHMDKIVPSLLFNMQK
170 180 190 200 210 220
100 110 120 130 140
mKIAA0 VEEAESR--SPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSL
.::..:: :: .: .:: :::: ::: :.:::::::.:::..::..::. :::.:.:
mKIAA0 IEEVDSRLGPPSSPSAADKE-ENPAVLAESCFRELLGRATFGNMNNAVRPVFAHLDHHKL
230 240 250 260 270
150 160 170 180 190 200
mKIAA0 WEPKVFATRCFKIIMYSIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAIIAA
:.:. ::..:::::::::: :.:: :::..:.:::: ... :::::..:: ::. :::
mKIAA0 WDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDARRKDSPRVRAGIIQVLLEAVAIAA
280 290 300 310 320 330
210 220 230 240 250 260
mKIAA0 TGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGSKIIKEHEECMFQEAVIKTIGS
::.::::::.:::::..::::.. . : :.:. . :...: . :.:::.:::
mKIAA0 KGSIGPTVLEVFNTLLKHLRLSVELEANDSQKGSVGSVTVSSKDNDEKIVQNAVIQTIGF
340 350 360 370 380 390
270 280 290 300 310 320
mKIAA0 FASTLPTYQRSEVILFIMSKVPL-PSVHHPVETGRTGENRNRLTQIMLLKSLLQVSTGFQ
:.:.:: :::::...:::.:::. . : .. .. :. .: :::::.:::.:..:..
mKIAA0 FGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYK
400 410 420 430 440 450
330 340 350 360 370 380
mKIAA0 CNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLGDISVL
.....:::..::: ::: .:::: :.: .:::.. ...::: :: :. : . :.. :
mKIAA0 AKTIVTALPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADL
460 470 480 490 500 510
390 400 410 420 430 440
mKIAA0 KLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANEEVV
:.: .: :::: ::::..:::::::::.:::: :.::.:: :: ::::.:::::::::
mKIAA0 KIKREKICRQDTSFMKKNGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEVV
520 530 540 550 560 570
450 460
mKIAA0 VDLIRLVLAVQ--------------------------------------------VIETR
.:::::..:.: :::::
mKIAA0 IDLIRLAIALQDSAIINEDNLSMFHRCGIMALVAAYLNFVSQMIAVPAFCQHVSKVIETR
580 590 600 610 620 630
470 480 490 500 510 520
mKIAA0 KKEAPYMLPEDVFVEKPRLSQNLDGVVIEFLFRQSKISEVLGGSGYNSDRLCLPYIPQLT
::::.::: .: .: : ..:. .. : .::.: ::::::. .:: .::.::.:
mKIAA0 TMEAPYFLPEHIFRDKCMLPKSLEKHDKNLYFLTNKIAESLGGSGYSVERLTVPYVPQVT
640 650 660 670 680 690
530 540 550 560 570 580
mKIAA0 DEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERER
::::::.:::: .:.:.::.. : . : . .::::.:.::::: :. ..::::.:.
mKIAA0 DEDRLSRRKSIVDTVSIQVDILSNSVPSDDVVSNTEEITFEALKKAI-DTNGMEEQEKEK
700 710 720 730 740 750
590 600 610 620 630 640
mKIAA0 QRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTISAAYGQPQNHS
.: :.:::::::::::::.: ..:.::...: ::.:.:::::::::::.... :. : .:
mKIAA0 RRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTVTSGHTQYQS
760 770 780 790 800 810
650
mKIAA0 IPVYEMKFPDLCVY
.:::::::::::::
mKIAA0 VPVYEMKFPDLCVY
820 830
657 residues in 1 query sequences
1768360 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:32:36 2006 done: Mon Mar 27 10:32:37 2006
Scan time: 0.810 Display time: 0.050
Function used was FASTA [version 3.4t11 Apr 17, 2002]