FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0953.ptfa, 657 aa vs ./tmplib.26680 library 1768360 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.9932+/-0.00421; mu= 8.8483+/- 0.280 mean_var=101.3780+/-23.122, 0's: 0 Z-trim: 2 B-trim: 25 in 1/35 Lambda= 0.1274 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0143 ( 832 res) mph02435 ( 832) 1847 350 4.2e-97 >>mKIAA0143 ( 832 res) mph02435 (832 aa) initn: 1686 init1: 726 opt: 1847 Z-score: 1835.6 bits: 350.3 E(): 4.2e-97 Smith-Waterman score: 2507; 56.392% identity (60.611% ungapped) in 704 aa overlap (1-657:131-832) 10 20 30 mKIAA0 LGTNSFVKFANIEEDTPSYHRSYDFFVSRF ::::::::::::::::::::: :::::::: mKIAA0 CHSQSIKPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRF 110 120 130 140 150 160 40 50 60 70 80 90 mKIAA0 SEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQH : :::: :.: ::.:.::..::.:.::::::::::::.:.::.::::::::::::::.:. mKIAA0 SAMCHSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDELRATIWEPQHMDKIVPSLLFNMQK 170 180 190 200 210 220 100 110 120 130 140 mKIAA0 VEEAESR--SPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHSL .::..:: :: .: .:: :::: ::: :.:::::::.:::..::..::. :::.:.: mKIAA0 IEEVDSRLGPPSSPSAADKE-ENPAVLAESCFRELLGRATFGNMNNAVRPVFAHLDHHKL 230 240 250 260 270 150 160 170 180 190 200 mKIAA0 WEPKVFATRCFKIIMYSIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAIIAA :.:. ::..:::::::::: :.:: :::..:.:::: ... :::::..:: ::. ::: mKIAA0 WDPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDARRKDSPRVRAGIIQVLLEAVAIAA 280 290 300 310 320 330 210 220 230 240 250 260 mKIAA0 TGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGSKIIKEHEECMFQEAVIKTIGS ::.::::::.:::::..::::.. . : :.:. . :...: . :.:::.::: mKIAA0 KGSIGPTVLEVFNTLLKHLRLSVELEANDSQKGSVGSVTVSSKDNDEKIVQNAVIQTIGF 340 350 360 370 380 390 270 280 290 300 310 320 mKIAA0 FASTLPTYQRSEVILFIMSKVPL-PSVHHPVETGRTGENRNRLTQIMLLKSLLQVSTGFQ :.:.:: :::::...:::.:::. . : .. .. :. .: :::::.:::.:..:.. mKIAA0 FGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYK 400 410 420 430 440 450 330 340 350 360 370 380 mKIAA0 CNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHKFSTISTLGDISVL .....:::..::: ::: .:::: :.: .:::.. ...::: :: :. : . :.. : mKIAA0 AKTIVTALPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADL 460 470 480 490 500 510 390 400 410 420 430 440 mKIAA0 KLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALISIELANEEVV :.: .: :::: ::::..:::::::::.:::: :.::.:: :: ::::.::::::::: mKIAA0 KIKREKICRQDTSFMKKNGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEVV 520 530 540 550 560 570 450 460 mKIAA0 VDLIRLVLAVQ--------------------------------------------VIETR .:::::..:.: ::::: mKIAA0 IDLIRLAIALQDSAIINEDNLSMFHRCGIMALVAAYLNFVSQMIAVPAFCQHVSKVIETR 580 590 600 610 620 630 470 480 490 500 510 520 mKIAA0 KKEAPYMLPEDVFVEKPRLSQNLDGVVIEFLFRQSKISEVLGGSGYNSDRLCLPYIPQLT ::::.::: .: .: : ..:. .. : .::.: ::::::. .:: .::.::.: mKIAA0 TMEAPYFLPEHIFRDKCMLPKSLEKHDKNLYFLTNKIAESLGGSGYSVERLTVPYVPQVT 640 650 660 670 680 690 530 540 550 560 570 580 mKIAA0 DEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLKKAIVDSVAVEEQERER ::::::.:::: .:.:.::.. : . : . .::::.:.::::: :. ..::::.:. mKIAA0 DEDRLSRRKSIVDTVSIQVDILSNSVPSDDVVSNTEEITFEALKKAI-DTNGMEEQEKEK 700 710 720 730 740 750 590 600 610 620 630 640 mKIAA0 QRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPPPSPSGTISAAYGQPQNHS .: :.:::::::::::::.: ..:.::...: ::.:.:::::::::::.... :. : .: mKIAA0 RRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTVTSGHTQYQS 760 770 780 790 800 810 650 mKIAA0 IPVYEMKFPDLCVY .::::::::::::: mKIAA0 VPVYEMKFPDLCVY 820 830 657 residues in 1 query sequences 1768360 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:32:36 2006 done: Mon Mar 27 10:32:37 2006 Scan time: 0.810 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]