FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1042.ptfa, 1016 aa vs ./tmplib.26680 library 1768001 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.2618+/-0.00698; mu= 2.4874+/- 0.463 mean_var=263.6578+/-64.840, 0's: 0 Z-trim: 6 B-trim: 25 in 1/35 Lambda= 0.0790 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0549 ( 524 res) mbg09571 ( 524) 502 71 5.3e-13 >>mKIAA0549 ( 524 res) mbg09571 (524 aa) initn: 1151 init1: 291 opt: 502 Z-score: 325.8 bits: 70.9 E(): 5.3e-13 Smith-Waterman score: 1165; 44.346% identity (50.605% ungapped) in 566 aa overlap (464-1004:1-521) 440 450 460 470 480 490 mKIAA1 TSRRYHSLGLFPMDSLAAEIEGTMRKELQLEELESPDITHQKRVFETVRNVNQVVKQRSL :: : . ..:::::.::. .:.. . ::. mKIAA0 EESVSKQKAQQKRVFDTVKVANDT-RGRSV 10 20 500 510 520 530 540 550 mKIAA1 T-PSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVSNVVLDNKTNSILLETEAADLGN : : . :::::.::.. . . : . : :. . ..:: .: .... . mKIAA0 TFPVLLPIPGSNRSSVIMT------AKP----FESGVQPA--EDKT--LLSPGGSTEVPG 30 40 50 60 70 560 570 580 590 600 610 mKIAA1 EDHNKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELHSGS ... .: ::.: . :: :::.::::::.:::::..:: :: :::.. :::. : :. mKIAA0 NSRPTNP--PGSPEDSDLATALHRLSLRRQNYLSEKQFFAEEWERKIQILAEQEEEVSSC 80 90 100 110 120 130 620 630 640 650 660 670 mKIAA1 LTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHL .:::.. :. : . :: : . : . :...::::::::::::: :::::::::::.: mKIAA0 DAPTENLASVCTDQ--SETTDL-GSAGCLRGFMPEKLQIVKPLEGSQTLHHWQQLAQPNL 140 150 160 170 180 190 680 690 700 710 720 mKIAA1 GGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDD-------TGDHISLAGL-ATSTPIQ : ::::::::.:::: .: : :: ..:.:::. . . ..: : ::. mKIAA0 GTILDPRPGVITKGFT--QVPKDVVYHISDLEEDEEEGITFQVQQPLQLEQKPALPTPVT 200 210 220 230 240 730 740 750 760 770 mKIAA1 H----PETSA--------HHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPLNSAPAPAC : ::: .::::.: ::::::::::::::::: .:.::: .. :. :: mKIAA0 GIFLPPMTSAGGPGTVATSNPGKCLSFTNSTFTFTTCRILHPSD-ITQVTPSSGFPSLAC 250 260 270 280 290 300 780 790 800 810 820 830 mKIAA1 -SSTSHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQ ::.: ..: : .: . :::..::.:: :.:: :.:.. .:. ::.:::::: :: mKIAA0 GSSASSSSNTAVNSPAASYRLSIGESITNRRDSTITFSSTRSLAKLLQERGISAKVYHSP 310 320 330 340 350 360 840 850 860 870 880 890 mKIAA1 SWDRAGRGSLLHSYTPRMAVIPSTPPNSPMQTPSASPPSFEFKCTSPPYNNFLASKPASS :... ::. :. . :::::::: :.: .:: :: . .:::::.:: . mKIAA0 ----ASENPLLQP-CPKALATPSTPPNSPAQSPCSSPLPFEPRVHVS--ENFLASRPAET 370 380 390 400 410 420 900 910 920 930 940 950 mKIAA1 ILREVREKRPVRSSESQTDVSVSNLNLVDKVRRFGVARVVNSGRARIPTLTEEQGPLLCG .:.:. :: :. ::. ..::::...:.:.::::.. . ..: : mKIAA0 FLQEMYGLRPSRAPP---DVGQLKMNLVDRLKRLGIARVVKTPDPQENGKSREAEMGLQK 430 440 450 460 470 960 970 980 990 1000 mKIAA1 PTGPAQALVPGGLVPEGLPLGCPSGIRRNRSFPTMVGSSVQMRAPVILTS---GILMGAK : :: : :: : : :.:::.:.:.:.:: . ::: :: ::: mKIAA0 PD-PAVYLNSGG------SLLC--GLRRNQSLPVMMGS---FGAPVCTTSPKMGILKED 480 490 500 510 520 1010 mKIAA1 LPKQTSLR 1016 residues in 1 query sequences 1768001 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:34:39 2006 done: Mon Mar 27 10:34:40 2006 Scan time: 1.050 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]