FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1042.ptfa, 1016 aa
 vs ./tmplib.26680 library

1768001 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.2618+/-0.00698; mu= 2.4874+/- 0.463
 mean_var=263.6578+/-64.840, 0's: 0 Z-trim: 6  B-trim: 25 in 1/35
 Lambda= 0.0790

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0549  ( 524 res)   mbg09571                   ( 524)  502   71 5.3e-13


>>mKIAA0549  ( 524 res)   mbg09571                        (524 aa)
 initn: 1151 init1: 291 opt: 502  Z-score: 325.8  bits: 70.9 E(): 5.3e-13
Smith-Waterman score: 1165;  44.346% identity (50.605% ungapped) in 566 aa overlap (464-1004:1-521)

           440       450       460       470       480       490   
mKIAA1 TSRRYHSLGLFPMDSLAAEIEGTMRKELQLEELESPDITHQKRVFETVRNVNQVVKQRSL
                                     ::  : . ..:::::.::. .:.. . ::.
mKIAA0                               EESVSKQKAQQKRVFDTVKVANDT-RGRSV
                                             10        20          

            500       510       520       530       540       550  
mKIAA1 T-PSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVSNVVLDNKTNSILLETEAADLGN
       : :  . :::::.::.. .      . :    . : :. .  ..::  .:    .... .
mKIAA0 TFPVLLPIPGSNRSSVIMT------AKP----FESGVQPA--EDKT--LLSPGGSTEVPG
      30        40              50              60          70     

            560       570       580       590       600       610  
mKIAA1 EDHNKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELHSGS
       ...  .:  ::.: . :: :::.::::::.:::::..:: :: :::.. :::. :  :. 
mKIAA0 NSRPTNP--PGSPEDSDLATALHRLSLRRQNYLSEKQFFAEEWERKIQILAEQEEEVSSC
          80          90       100       110       120       130   

            620       630       640       650       660       670  
mKIAA1 LTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHL
        .:::.. :. : .  :: : . : .   :...::::::::::::: :::::::::::.:
mKIAA0 DAPTENLASVCTDQ--SETTDL-GSAGCLRGFMPEKLQIVKPLEGSQTLHHWQQLAQPNL
           140         150        160       170       180       190

            680       690       700              710        720    
mKIAA1 GGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDD-------TGDHISLAGL-ATSTPIQ
       : ::::::::.::::   .:  : :: ..:.:::.       . . ..:    :  ::. 
mKIAA0 GTILDPRPGVITKGFT--QVPKDVVYHISDLEEDEEEGITFQVQQPLQLEQKPALPTPVT
              200         210       220       230       240        

              730               740       750       760       770  
mKIAA1 H----PETSA--------HHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPLNSAPAPAC
            : :::         .::::.: ::::::::::::::::: .:.::: .. :. ::
mKIAA0 GIFLPPMTSAGGPGTVATSNPGKCLSFTNSTFTFTTCRILHPSD-ITQVTPSSGFPSLAC
      250       260       270       280       290        300       

             780       790       800       810       820       830 
mKIAA1 -SSTSHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQ
        ::.:  ..: : .: .  :::..::.:: :.:: :.:.. .:. ::.:::::: ::   
mKIAA0 GSSASSSSNTAVNSPAASYRLSIGESITNRRDSTITFSSTRSLAKLLQERGISAKVYHSP
       310       320       330       340       350       360       

             840       850       860       870       880       890 
mKIAA1 SWDRAGRGSLLHSYTPRMAVIPSTPPNSPMQTPSASPPSFEFKCTSPPYNNFLASKPASS
           :... ::.   :.  . :::::::: :.: .::  :: .      .:::::.:: .
mKIAA0 ----ASENPLLQP-CPKALATPSTPPNSPAQSPCSSPLPFEPRVHVS--ENFLASRPAET
           370        380       390       400         410       420

             900       910       920       930       940       950 
mKIAA1 ILREVREKRPVRSSESQTDVSVSNLNLVDKVRRFGVARVVNSGRARIPTLTEEQGPLLCG
       .:.:.   :: :.     ::.  ..::::...:.:.::::..   .    ..:    :  
mKIAA0 FLQEMYGLRPSRAPP---DVGQLKMNLVDRLKRLGIARVVKTPDPQENGKSREAEMGLQK
              430          440       450       460       470       

             960       970       980       990      1000           
mKIAA1 PTGPAQALVPGGLVPEGLPLGCPSGIRRNRSFPTMVGSSVQMRAPVILTS---GILMGAK
       :  ::  :  ::       : :  :.:::.:.:.:.::   . :::  ::   :::    
mKIAA0 PD-PAVYLNSGG------SLLC--GLRRNQSLPVMMGS---FGAPVCTTSPKMGILKED 
        480             490         500          510       520     

     1010      
mKIAA1 LPKQTSLR




1016 residues in 1 query   sequences
1768001 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:34:39 2006 done: Mon Mar 27 10:34:40 2006
 Scan time:  1.050 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]