FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1777.ptfa, 502 aa
 vs ./tmplib.26680 library

1768515 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6411+/-0.00419; mu= 15.4054+/- 0.281
 mean_var=86.6462+/-20.136, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1378

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1976  ( 328 res)   mbh03993                   ( 328)  632  135 6.3e-33


>>mKIAA1976  ( 328 res)   mbh03993                        (328 aa)
 initn: 624 init1: 624 opt: 632  Z-score: 683.5  bits: 135.4 E(): 6.3e-33
Smith-Waterman score: 632;  40.376% identity (40.376% ungapped) in 213 aa overlap (276-488:115-327)

         250       260       270       280       290       300     
mKIAA1 GCMSCNSLDYNLRVYCVDNTPCAFQEVISDERHQGGQLLEEPKLLHFKGNTFSLQVSVLD
                                     :.. ::::..::..:::: .  .:..:. :
mKIAA1 TIQPDLSTTTTTYQGSLCPRQDGPSPKFQLEKQLGGQLIQEPRVLHFKDSYHNLRLSIHD
           90       100       110       120       130       140    

         310       320       330       340       350       360     
mKIAA1 IPPFLWRIKPFTACQEVPFSRVWSSNRQPLHCAFSLERYTPTTTQLSCKICIRQLKGHEQ
       .:  ::. : ... ::.:: ..:....: :::.:.::: . .:..:.::. . :..:  :
mKIAA1 VPSSLWKSKLLVSYQEIPFYHIWNGTQQYLHCTFTLERVNASTSDLACKVWVWQVEGDGQ
          150       160       170       180       190       200    

         370       380       390       400       410       420     
mKIAA1 ILQVQTSILESERETITFFAQEDSTFPAQTGPKAFKIPYSIRQRICATFDTPNAKGKDWQ
        .... .: .. : .  .  . ..  :: .::.:::::. :::.: ...: : ..: ::.
mKIAA1 SFNINFNITKDTRFAEMLALESEGGVPALVGPSAFKIPFLIRQKIITSLDPPCSRGADWR
          210       220       230       240       250       260    

         430       440       450       460       470       480     
mKIAA1 MLAQKNSINRNLSYFATQSSPSAVILNLWEARHQQDGDLDSLACALEEIGRTHTKLSNIT
        ::::  .. .::.::.. ::.:.:::::::::  .:.: .:: :.  .:.  . : ...
mKIAA1 TLAQKLHLDSHLSFFASKPSPTAMILNLWEARHFPNGNLGQLAAAVAGLGQPDAGLFTVS
          270       280       290       300       310       320    

         490       500  
mKIAA1 EPQIDDADFNYSRQNGL
       : .              
mKIAA1 EAEC             
                        




502 residues in 1 query   sequences
1768515 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:52:57 2006 done: Mon Mar 27 10:52:58 2006
 Scan time:  0.700 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]