FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA0820.ptfa, 452 aa
vs ./tmplib.26680 library
1768565 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 12.0037+/-0.00943; mu= -18.5254+/- 0.624
mean_var=487.9447+/-120.644, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36
Lambda= 0.0581
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA4093 ( 871 res) mfj26207 ( 871) 1385 130 5.5e-31
>>mKIAA4093 ( 871 res) mfj26207 (871 aa)
initn: 1819 init1: 651 opt: 1385 Z-score: 648.6 bits: 130.2 E(): 5.5e-31
Smith-Waterman score: 2000; 69.414% identity (76.372% ungapped) in 461 aa overlap (1-429:414-864)
10 20 30
mKIAA0 NIHGIRTGLFTPDMAFEAIVKKQIVKLKGP
:::::::::::::.:::: ::::. ::: :
mKIAA4 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDLAFEATVKKQVQKLKEP
390 400 410 420 430 440
40 50 60 70 80 90
mKIAA0 SLKSVDLVMQELINTVKKCTKRLANFPRLCEETERIVANHIREREGKTKDQVLLLIDIQV
:.: ::.:..:: .:..::...: ..::: :: ::::..:::::::.::.::.:::::..
mKIAA4 SIKCVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIEL
450 460 470 480 490 500
100 110 120 130
mKIAA0 SYINTNHEDFIGFANAQQRSSQVHKKSTIGNQ----VIRKGWLTVSNIGIMK--------
.:.:::::::::::::::::.:..::.: ::: ::::::::..::::::
mKIAA4 AYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWF
510 520 530 540 550 560
140 150 160 170 180
mKIAA0 ----------KDDEEKEKKYMLPLDNLKVRDVEKGFMSSKHVFALFNTEQRNVYKDYRFL
:::::::::::: .::::.::::::::::::.:::::::::::::::: :
mKIAA4 VLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQL
570 580 590 600 610 620
190 200 210 220 230 240
mKIAA0 ELACDSQEDVDSWKASLLRAGVYPDKSVGSNK--TENDENGQAENF--SMDPQLERQVET
::::..::.:::::::.:::::::.. ::... .:..::: ...: ::::::::::::
mKIAA4 ELACETQEEVDSWKASFLRAGVYPER-VGDKEKASETEENG-SDSFMHSMDPQLERQVET
630 640 650 660 670 680
250 260 270 280 290 300
mKIAA0 IRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTLMEESAEQ
:::::::::.:.:: .:::.:::::::::::.:.:: :::::.::: ::::::::::::
mKIAA4 IRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQ
690 700 710 720 730 740
310 320 330 340 350
mKIAA0 AQRRDEMLRMYQALKEALAIIGDINTATVSTPAPPPVDDSWLQ-----HSRRSPPPSPTT
:::::::::::.::::::.:::::::.::::: :::::::::: .:::: :::
mKIAA4 AQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWLQVQSVPAGRRSPTSSPTP
750 760 770 780 790 800
360 370 380 390 400 410
mKIAA0 QRRLTISAPLPRPTSGRGPAPAIPSPGPH-SGAPPVPFRPGPLPPFPNSSDSFGAPPQVP
::: ..: :: : :::::. : : .:::::: ::: : : :: :::::
mKIAA4 QRRAP-AVPPARPGS-RGPAPGPPPAGSALGGAPPVPSRPGASP------DPFGPPPQVP
810 820 830 840 850
420 430 440 450
mKIAA0 SRPTRAPPSVPSRRPPPSPTRPTIIRPLESSLLD
:::.::::.::
mKIAA4 SRPNRAPPGVPRITISDP
860 870
452 residues in 1 query sequences
1768565 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:29:33 2006 done: Mon Mar 27 10:29:34 2006
Scan time: 0.650 Display time: 0.030
Function used was FASTA [version 3.4t11 Apr 17, 2002]