FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0820.ptfa, 452 aa vs ./tmplib.26680 library 1768565 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.0037+/-0.00943; mu= -18.5254+/- 0.624 mean_var=487.9447+/-120.644, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0581 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4093 ( 871 res) mfj26207 ( 871) 1385 130 5.5e-31 >>mKIAA4093 ( 871 res) mfj26207 (871 aa) initn: 1819 init1: 651 opt: 1385 Z-score: 648.6 bits: 130.2 E(): 5.5e-31 Smith-Waterman score: 2000; 69.414% identity (76.372% ungapped) in 461 aa overlap (1-429:414-864) 10 20 30 mKIAA0 NIHGIRTGLFTPDMAFEAIVKKQIVKLKGP :::::::::::::.:::: ::::. ::: : mKIAA4 RIFHERFPFELVKMEFDEKELRREISYAIKNIHGIRTGLFTPDLAFEATVKKQVQKLKEP 390 400 410 420 430 440 40 50 60 70 80 90 mKIAA0 SLKSVDLVMQELINTVKKCTKRLANFPRLCEETERIVANHIREREGKTKDQVLLLIDIQV :.: ::.:..:: .:..::...: ..::: :: ::::..:::::::.::.::.:::::.. mKIAA4 SIKCVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIEL 450 460 470 480 490 500 100 110 120 130 mKIAA0 SYINTNHEDFIGFANAQQRSSQVHKKSTIGNQ----VIRKGWLTVSNIGIMK-------- .:.:::::::::::::::::.:..::.: ::: ::::::::..:::::: mKIAA4 AYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWF 510 520 530 540 550 560 140 150 160 170 180 mKIAA0 ----------KDDEEKEKKYMLPLDNLKVRDVEKGFMSSKHVFALFNTEQRNVYKDYRFL :::::::::::: .::::.::::::::::::.:::::::::::::::: : mKIAA4 VLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQL 570 580 590 600 610 620 190 200 210 220 230 240 mKIAA0 ELACDSQEDVDSWKASLLRAGVYPDKSVGSNK--TENDENGQAENF--SMDPQLERQVET ::::..::.:::::::.:::::::.. ::... .:..::: ...: :::::::::::: mKIAA4 ELACETQEEVDSWKASFLRAGVYPER-VGDKEKASETEENG-SDSFMHSMDPQLERQVET 630 640 650 660 670 680 250 260 270 280 290 300 mKIAA0 IRNLVDSYMSIINKCIRDLIPKTIMHLMINNVKDFINSELLAQLYSSEDQNTLMEESAEQ :::::::::.:.:: .:::.:::::::::::.:.:: :::::.::: :::::::::::: mKIAA4 IRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQ 690 700 710 720 730 740 310 320 330 340 350 mKIAA0 AQRRDEMLRMYQALKEALAIIGDINTATVSTPAPPPVDDSWLQ-----HSRRSPPPSPTT :::::::::::.::::::.:::::::.::::: :::::::::: .:::: ::: mKIAA4 AQRRDEMLRMYHALKEALSIIGDINTTTVSTPMPPPVDDSWLQVQSVPAGRRSPTSSPTP 750 760 770 780 790 800 360 370 380 390 400 410 mKIAA0 QRRLTISAPLPRPTSGRGPAPAIPSPGPH-SGAPPVPFRPGPLPPFPNSSDSFGAPPQVP ::: ..: :: : :::::. : : .:::::: ::: : : :: ::::: mKIAA4 QRRAP-AVPPARPGS-RGPAPGPPPAGSALGGAPPVPSRPGASP------DPFGPPPQVP 810 820 830 840 850 420 430 440 450 mKIAA0 SRPTRAPPSVPSRRPPPSPTRPTIIRPLESSLLD :::.::::.:: mKIAA4 SRPNRAPPGVPRITISDP 860 870 452 residues in 1 query sequences 1768565 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:29:33 2006 done: Mon Mar 27 10:29:34 2006 Scan time: 0.650 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]