FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0054.ptfa, 1617 aa vs ./tmplib.26680 library 1767400 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.9264+/-0.00913; mu= -15.4439+/- 0.601 mean_var=515.3131+/-126.729, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.0565 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0458 ( 882 res) mbg00904 ( 882) 299 40 0.0023 mKIAA1631 ( 1027 res) mej00871 (1027) 288 39 0.0047 >>mKIAA0458 ( 882 res) mbg00904 (882 aa) initn: 157 init1: 114 opt: 299 Z-score: 152.9 bits: 40.3 E(): 0.0023 Smith-Waterman score: 311; 26.121% identity (28.863% ungapped) in 379 aa overlap (1161-1514:37-404) 1140 1150 1160 1170 1180 1190 mKIAA0 VKSLYHPQSDHFQSDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTG :. .: : .:. : . : : .:. .. mKIAA0 SPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIP-SPQDNESDSDSSAQQQMLQAQ 10 20 30 40 50 60 1200 1210 1220 1230 1240 mKIAA0 TSILYVPAVYGGNVVMSVPLPVPWTGYQG----RFAVDPR--IITHQAAMAYNMNLL--- : .:. .... ..: .: :: :: :. : : . .. mKIAA0 PPALQAPS-GAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAA 70 80 90 100 110 120 1250 1260 1270 1280 1290 mKIAA0 HTHGRGSPI---PYGLGHHPPVS-LGQPQSQHAEKDQQEQNRNGKTDTNNPGPEINKIRT ::: . .: : . :::.. . : :: . . . . . .:. . :::. . mKIAA0 HTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHGQ---GPPGPHSLQTGP 130 140 150 160 170 180 1300 1310 1320 1330 1340 1350 mKIAA0 PEKKPTEPKQVDLESNP-QNRSPES-RPGVV--YSNTKFP-RKDHLNPRHINNLPLPAPH ..: :. : :.: :...: . :... .:. ..: .. :.:.. : : mKIAA0 LLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQPPR-EQPLPP 190 200 210 220 230 240 1360 1370 1380 1390 1400 1410 mKIAA0 AQYAIPSRHFHPLPQLPRPPFPASQPHTLLNQQQNNLPEQPNQMAPQPNQVAPQPNQMTP : :.: :..: : : : .:: : : . .. : . : : : . : . : mKIAA0 APLAMP--HIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTH 250 260 270 280 290 1420 1430 1440 1450 1460 1470 mKIAA0 QPNQVAPQPNQVVQQQSQAPPQAPQPAPQLSPAFQAGPTNAFFNNAVAHRPQSPAAEAVG .: .. : : :.. : :: :..: : :. . . : : .. :. : . mKIAA0 HPPSAHPPPLQLMPQ-SQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQH 300 310 320 330 340 350 1480 1490 1500 1510 1520 mKIAA0 PEQP--PPPGLPDGHSPLRAITQP-GPILAS--PLNNFVDE--SSPGLPIEEALDGVHGS : : ::: : . : : : :: .: : . :. : :: : mKIAA0 PFVPGGPPPITPPSCPPTS--TPPAGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQIKE 360 370 380 390 400 410 1530 1540 1550 1560 1570 1580 mKIAA0 VALETLRQQQARLQQWSEHHAYLSQGGIPYSHHHHPHLPHLPHTPIGLHQPPVRAEWKVA mKIAA0 EALDEAEEPESPPPPPRSPSPEPTVVDTPSHASQSARFYKHLDRGYNSCARTDLYFMPLA 420 430 440 450 460 470 >>mKIAA1631 ( 1027 res) mej00871 (1027 aa) initn: 425 init1: 104 opt: 288 Z-score: 147.2 bits: 39.5 E(): 0.0047 Smith-Waterman score: 651; 28.811% identity (34.797% ungapped) in 715 aa overlap (429-1083:322-973) 400 410 420 430 440 mKIAA0 QLVTTAKRWDSSSKTIVDFEPNETTDLEKSLLIRYQIP--LSADQLFT--------QSVL .:.: .: :.. ..:: .. : mKIAA1 TNRIEEGERPDRAKGYELELSLALGTYYPPILLRQLLPTLLQGPSIFTAPKEVAEIKAQL 300 310 320 330 340 350 450 460 470 480 490 500 mKIAA0 DKSLTKTNYQARLHDLLYIEEIAQYKEVSRFNLKVQLQILASFMLTGVSGGAKYAQNGQL . .: . ::...:. ::..::. . ... ...: : .: :: .: mKIAA1 ETTLKSRNYEVKLRLLLHLEELQMEHDIRHYDLD-------SVPMTW----DPVDQNPRL 360 370 380 390 400 510 520 530 540 550 560 mKIAA0 FGRFKLTETLSEDTLA-GRLVMTRVNAVYLLPVPKEKLVQSQGTKEKVYEATIEEKTKDY . :: .: .: . : . .. : . .: .: .:.. ... : mKIAA1 L-------TLEVPGVAESRPSVLRGDHLFAL-LSSE----TQQDDPVTYKGFVHKVELDR 410 420 430 440 570 580 590 600 610 620 mKIAA0 VFLRISRECCEELSLRPDCDIQVELQFQLNRLPLCEMHYALD---RIKDNAVLFP----D : : .: :: : . ...: .:: :: .: ::. : .::: mKIAA1 VKLSFSTSL---LSRFVD-GLTFKVNFTFNRQPLRVQHRALELTGRWVLWPMLFPVASRG 450 460 470 480 490 500 630 640 650 660 670 mKIAA0 ISMTPT-IPWSPNRQWDEQLD--PRLNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTF .:. :. . . . .:..:. :. .:. : . : : : .:.:: ::::: mKIAA1 VSLLPSDVKF---KLYDRSLESNPEQLQAMKHIVRGTTRP-----APYIIFGPPGTGKTV 510 520 530 540 550 680 690 700 710 720 730 mKIAA0 TLAQAAKHILQQ-QETRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVK ::..: :..... ...:: :. :::.::: : ... :.. :. .: .. mKIAA1 TLVEAIKQVVKHLPKAHILACAPSNSGADL-----LCQRLRVHLPSS-IYRLLAPSRDIR 560 570 580 590 600 610 740 750 760 770 780 790 mKIAA0 TVHPVVHQYCLISSTQSTFQMPQKEDILKHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDE : .. : .. .. . .: :. . ..::...:: :.. : . .. :::...:: mKIAA1 MVPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVLITTLITASRLVSAQFPIDHFTHIFIDE 620 630 640 650 660 670 800 810 820 830 840 mKIAA0 AAQAMECETIMPLA--LATKNT-----RIVLAGDHMQLSPFVYSEFARERNLHVSLLDRL :.. :: :... .: . .:.: ..::::: ::.: . : .: ...: :::.:: mKIAA1 AGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERL 680 690 700 710 720 730 850 860 870 880 890 mKIAA0 ------YEHYPAEF-PCRIL-LCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDF--- :.. : . : : : .::::: .:.. ..:.:.:.:.: . .. : mKIAA1 LAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDRERFCRW 740 750 760 770 780 790 900 910 920 930 940 mKIAA0 -------YPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAW-GK--LDD .:. : . :.: .: :: .:.: :. :. ...: : . :: :. mKIAA1 EGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLA--PSSKKGKARLSP 800 810 820 830 840 950 960 970 980 990 1000 mKIAA0 GSIGVVTPYADQVFRIRA-------ELRK-KRLSDVNVERVLNVQGKQFRVLFLSTVRTR ..::..:: :: .:: ::: ..:..: : . ::.. :...::::. mKIAA1 RNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRS- 850 860 870 880 890 900 1010 1020 1030 1040 1050 mKIAA0 HTCKHKQTPIKKKEQLLEDSTEDLDY--GFLSNYKLLNTAITRAQSLVAVVGDPVALCSI .:. . :: :::. :::.: : .:.:.:::..:. :::.:. : mKIAA1 -----SQSFV----QL------DLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLL--- 910 920 930 940 1060 1070 1080 1090 1100 1110 mKIAA0 GRCRKFWERFIALCHENHSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHS :. :. :. .:.:: . : : mKIAA1 GHDPD-WKTFLEFCKENGGYTGCPFPAKLDLQQGQDLLQGLSKLSPSTSGPRRHQNLPQE 950 960 970 980 990 1000 1617 residues in 1 query sequences 1767400 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:11:18 2006 done: Mon Mar 27 10:11:20 2006 Scan time: 1.220 Display time: 0.150 Function used was FASTA [version 3.4t11 Apr 17, 2002]