FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0438.ptfa, 711 aa
 vs ./tmplib.26680 library

1768306 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.3563+/-0.00544; mu= 9.8669+/- 0.365
 mean_var=142.9626+/-32.553, 0's: 0 Z-trim: 7  B-trim: 17 in 1/35
 Lambda= 0.1073

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1810  ( 568 res)   mbh02539                   ( 568)  195   42 0.00022
mKIAA1100  ( 384 res)   mbg06933                   ( 384)  174   38  0.0016


>>mKIAA1810  ( 568 res)   mbh02539                        (568 aa)
 initn: 141 init1: 141 opt: 195  Z-score: 171.1  bits: 41.9 E(): 0.00022
Smith-Waterman score: 198;  36.842% identity (43.750% ungapped) in 95 aa overlap (617-711:270-349)

        590       600       610       620       630       640      
mKIAA0 AQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIK
                                     :. :: :   :..       : ::  :.. 
mKIAA1 MYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNV-------CIICREEMVT
     240       250       260       270       280              290  

        650       660       670       680       690       700      
mKIAA0 DDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIDASAAASSDPDPDASPANDN
          : .:::.:.::  :.  :.:.. :::.::      :. ::  :.: : :.  ::...
mKIAA1 G--AKRLPCNHIFHTSCLRSWFQRQQTCPTCRMD----VLRASLPAQSPPPPE--PADQG
              300       310       320           330         340    

        710                                                        
mKIAA0 AEEAP                                                       
          ::                                                       
mKIAA1 PPPAPHPQPLLPQPPNCKWPFICPFPPGMFPLWPPMGPFPPVPPPPSSGEAAAPPPTSTA
          350       360       370       380       390       400    

>>mKIAA1100  ( 384 res)   mbg06933                        (384 aa)
 initn: 211 init1: 138 opt: 174  Z-score: 155.6  bits: 38.4 E(): 0.0016
Smith-Waterman score: 174;  33.333% identity (34.483% ungapped) in 90 aa overlap (590-678:286-373)

     560       570       580       590       600       610         
mKIAA0 ADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPA-SKESIDG
                                     ::.  : : .::  .  :.: . .: .:. 
mKIAA1 FLPYFLSMLPMSPTTVGPTISLDLDVDDVEMENYEALL-NLAERLGDAKPRGLTKADIEQ
         260       270       280       290        300       310    

      620       630       640       650       660       670        
mKIAA0 LPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCR
       :: .  ..  .  ...  : .: :..   ..   :::.: ::  ::. ::. . :::.::
mKIAA1 LP-SYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR
           320       330       340       350       360       370   

      680       690       700       710 
mKIAA0 RHFPPAVIDASAAASSDPDPDASPANDNAEEAP
                                        
mKIAA1 ADASEVPREAE                      
           380                          




711 residues in 1 query   sequences
1768306 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:20:44 2006 done: Mon Mar 27 10:20:45 2006
 Scan time:  0.840 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]