FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0226.ptfa, 1003 aa
 vs ./tmplib.26680 library

1768014 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.3644+/-0.00714; mu= 7.9859+/- 0.477
 mean_var=249.6331+/-57.563, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.0812

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0356  ( 887 res)   mbg18666                   ( 887)  489   71 7.8e-13


>>mKIAA0356  ( 887 res)   mbg18666                        (887 aa)
 initn: 403 init1: 217 opt: 489  Z-score: 322.8  bits: 71.1 E(): 7.8e-13
Smith-Waterman score: 489;  32.773% identity (34.211% ungapped) in 238 aa overlap (739-971:650-882)

      710       720       730       740       750       760        
mKIAA0 ADIYKLRIRVRGNLEWAPPRPQIIFNVHPAPTRKIAVAKQNYRCAGCGIRTDPDYIKRLR
                                     ::.: .. .:.  ::::. .   ... : .
mKIAA0 LGGSLDEKCQEVLKFATRENGFLLQYLVAIPTEK-GLDSQGCFCAGCSRQIGFSFV-RPK
     620       630       640       650        660       670        

      770       780       790       800       810       820        
mKIAA0 YCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNVQDINS
        : . : :.:. ::..   :.:.::...::..:  :   .  .: .:  .::.:.: .:.
mKIAA0 LCAFSGLYYCDFCHQDDASVIPARIIHNWDLTKRPVCRQALKFLAQIRAQPLINLQLVNA
       680       690       700       710       720       730       

      830       840       850       860         870       880      
mKIAA0 ALYRKVKLLNQVRLLRVQLYHMKNMFKTCRLA--KELLDSFDVVPGHLTEDLHLYSLSDL
       .::..:. .. .   : ::  . ...  :: .  :::   ..   ..: :. : .:..::
mKIAA0 SLYEHVERMHLIGRSREQLKLLGDYLGLCRSGALKELCKRLSHR-NYLLESPHRFSVADL
       740       750       760       770       780        790      

        890       900       910       920       930       940      
mKIAA0 TATKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEFCQNEEDVIFPFELHKCRTCEEC
           .:     :  : . .. :: .: ::  .::::..:... :.:::::.     : ::
mKIAA0 QQIAEGVYEGFLKALIEFASQHVYHCDLCTQRGFICQICHHQ-DIIFPFEFDTTVRCAEC
        800       810       820       830        840       850     

        950          960       970       980       990      1000   
mKIAA0 KACYHKTC---FKSGRCPRCERLQARRELLAKQSLESYLSDYEEEPTEALALEATVLETT
       .. .:..:    ..: :::: : .  .:                                
mKIAA0 RTVFHQSCQAVVRKG-CPRCARRRKYQEQNVVS                           
         860       870        880                                  




1003 residues in 1 query   sequences
1768014 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:15:10 2006 done: Mon Mar 27 10:15:11 2006
 Scan time:  1.060 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]