FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1896.ptfa, 515 aa
 vs ./tmplib.26680 library

1768502 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.6612+/-0.00399; mu= 14.3130+/- 0.268
 mean_var=81.9704+/-18.793, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1417

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0446  ( 339 res)   mia37011                   ( 339)  259   63   5e-11


>>mKIAA0446  ( 339 res)   mia37011                        (339 aa)
 initn: 227 init1:  98 opt: 259  Z-score: 290.3  bits: 62.7 E(): 5e-11
Smith-Waterman score: 322;  24.415% identity (27.547% ungapped) in 299 aa overlap (233-507:37-325)

            210       220       230             240       250      
mKIAA1 YWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHL------VAGGGAGAVSRTCTAPLDRL
                                     :.::      : : .   . :. . :.  .
mKIAA0 MPGDSELAVQEPDRRSPGTMEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLI
         10        20        30        40        50        60      

        260       270       280       290       300       310      
mKIAA1 KVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRL
       .. .::. ..:       .:....:  :. .:.::  .:.. .   .     .::  ...
mKIAA0 RTRLQVQKGKSLYHGTFDAFVKILRADGVAGLYRGFLVNTFTLISGQCY-VTTYELTRKF
         70        80        90       100       110        120     

        320       330       340       350       360                
mKIAA1 VGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTG------QYSGML----
       :.. ...  . . ::::. :. .:::   :..:.. .. ... :      :  : :    
mKIAA0 VADYSQSNTV-KSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVHGNLEGQG
         130        140       150       160       170       180    

                370       380       390       400       410        
mKIAA1 --------DCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNS
               :  :.::  .:. .::.::. ..:  :: ...    :. .    :.:   . 
mKIAA0 VIAFGQTKDIIRQILRADGLRGFYRGYVASLLTYIPNSAVWWPFYH-FYAEQLSRLCPQE
          190       200       210       220       230        240   

      420       430       440       450       460       470        
mKIAA1 ADPGVFVLLACGTISSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKQILRTEGA
           ::  .. : .... ... . :. ..:::.:    .::   ....  :.:..  :: 
mKIAA0 CPHIVFQAIS-GPLAAATASILTNPMDVIRTRVQ----VEGKSSIVLT--FRQLMAEEGP
           250        260       270           280         290      

      480       490       500       510           
mKIAA1 FGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR      
       .::..::.  .... :.. .  : ::.::              
mKIAA0 WGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW
        300       310       320       330         




515 residues in 1 query   sequences
1768502 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:55:27 2006 done: Mon Mar 27 10:55:27 2006
 Scan time:  0.720 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]