FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0863.ptfa, 1208 aa vs ./tmplib.26680 library 1767809 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.9236+/-0.00822; mu= 1.3234+/- 0.547 mean_var=393.2463+/-93.186, 0's: 0 Z-trim: 10 B-trim: 0 in 0/36 Lambda= 0.0647 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0784 ( 1089 res) mbh00873 (1089) 344 47 1.6e-05 >>mKIAA0784 ( 1089 res) mbh00873 (1089 aa) initn: 1300 init1: 341 opt: 344 Z-score: 191.3 bits: 47.3 E(): 1.6e-05 Smith-Waterman score: 974; 26.478% identity (39.064% ungapped) in 1167 aa overlap (63-1200:1-820) 40 50 60 70 80 90 mKIAA0 GAPRAPRKISKMFQIPVQNLDNIRKVRKRVKGILVDIGLDSCKELMKDLKSFDPGEKYFY : :: ::::. ::: ..:.:.:.:.. :. mKIAA0 KKILSDIGLEYCKEHIEDFKQFEPNDFYLK 10 20 30 100 110 120 130 140 150 mKIAA0 NTSWGDVSPWEPS-GKKARYRTKPYCCSLCRYSTKVLTSLKNHLHRYHEDEADQELMIPC ::.: ::. :.:: :. :::::.::: : .:.: ... :.:.. : .. ...... : mKIAA0 NTTWEDVGLWDPSLTKNQDYRTKPFCCSACPFSSKFFSAYKSHFRNVHSEDFENRILLNC 40 50 60 70 80 90 160 170 180 190 200 mKIAA0 PNCPFSSQPRVVGKHFRMFHAPARKVQSYTVNILGET------KTSRSDVIS---FTCLK : : :... ... :...:::: .. : ... . . : ...: . . : : mKIAA0 PYCTFNADKKTLETHIKIFHAPNSSAPSSSLSTFKDKNKNDGLKPKQADNVEQAVYYCKK 100 110 120 130 140 150 210 220 230 240 250 260 mKIAA0 CNFSNTLYYSMKKHVLVAHFNYLINSYFGLRTEETGEQPKASDPVSVDKILPFD-KYYCK :.. . :: ..::. ::... :.. ..::. . . ::. . . .:: mKIAA0 CTYRDPLYEIVRKHIYREHFQHVAAPYIA----KAGEK-SLNGAVSLGTNAREECNIHCK 160 170 180 190 200 270 280 290 300 310 320 mKIAA0 KCSAIASSQDALMYHILTSDAHRDLENKLRSVISEHIKRTGFLKQMHIAPKPVTHLALPP .: . .: .::. : :: .: .: :. :. :....: mKIAA0 RCLFMPKSYEALVQH----------------VIEDH-ERIGYQVTAMIGH---TNVVVP- 210 220 230 240 330 340 350 360 370 380 mKIAA0 NSSAPSIAAPPPCFQLALPQNSQSSGTVQSVTVTPGTSGSLTHSPPTTAQSHVALVSSSL . : . : ::.... : :: . .:.:... mKIAA0 -RAKPLMLIAPK------PQDKKGMGL-----------------PPRIS----SLASGNV 250 260 270 390 400 410 420 430 440 mKIAA0 PVCQSSLSLQQSAPPPVFLSHSVALNQPVNTAVLPLTQPVGPVNKSVGTSILPVNQAMCS :: :: :: .: : .:.:... : . mKIAA0 ----RSLPSQQM----------------VNRLSIP-----KPNLNSTGVNM------MSN 280 290 300 450 460 470 480 490 500 mKIAA0 VNQAVRPGLLPLTKPMGPMNRPVGPAVLPMGPSVNSGVLQATSPGVISVGRAVPSGVLPA :. :: .. :: :::.. : mKIAA0 VH------------------------------------LQQNNYGVKSVGQSYGVG---- 310 320 510 520 530 540 550 560 mKIAA0 GQVTPAGVIPGQTATSGVLPTGQVVQSSTLPVGQTAPSRGLPPGQTVPLRVLPAGQVVPS :: : .: .:: .:.: ..::.:. mKIAA0 -------------------------QSVRLGLGGNAPVSIPQQSQSVK-QLLPSGNGRSF 330 340 350 570 580 590 600 610 620 mKIAA0 GLLSSNQTVPSGVVPVNQGVNSGVLQLGQPVTPGVLPVGPPVRPGVLQLSPSVSTSILPM :: ...: :... : .:.. :: :: .. ::::: . mKIAA0 GL-GAEQRPPAAARYSLQTANTS------------LP------PGQVK-SPSVS-----Q 360 370 380 390 630 640 650 660 670 680 mKIAA0 SQPVRAGTSQNTTFFTSGSILRQLIPTGKQVNGIPTYTLAPVSVTLPVPSGGGLAAVGPP :: : .: : : . : : ::.::: mKIAA0 SQASR--------------VLGQ-------------------SSSKPPP-----AATGPP 400 410 690 700 710 720 730 740 mKIAA0 PQVPVQFLPSGSGTQMGSSLPSLPSPQVLVSPAPSVFVQATPPLADANQALKQAKQWKTC : .:. : .:: : mKIAA0 P---------------------------------------------SNHCATQ--KWKIC 420 750 760 770 780 790 800 mKIAA0 PVCNELFPSNVYQVHMEVAHKQSEAQLCQVCNELFPANVYQVHMEVAHKQSESKSSEKLE .:::::: :::.::.: :: mKIAA0 TICNELFPENVYSVHFEKEHKA-------------------------------------- 430 440 450 810 820 830 840 850 860 mKIAA0 PEKLAACAPFLKWMREKTVRCLSCKCLVSQEELMHHLLMHGLGCLFCPCTFHDVRGLVEH ::. : : .. ... : .:: :. . . :..:.:.:::.: .: ::.::. .. : mKIAA0 -EKVPAVANYIMKIHNFTSKCLYCNRYLPTDTLLNHMLIHGLSCPYCRSTFNDVEKMAAH 460 470 480 490 500 510 870 880 890 900 910 920 mKIAA0 SRTKHLGKKRLSMDYSNRGFQLDLDANGNLLFPHLDFITILPREKLGEREVYLAILAGIH : :. .. :. .:.: :. .:. :: : :. .: .: : mKIAA0 MRMVHIDEEMGPKTDSTLSFDLTLQ-QGSHTNIHLLVTTYNLRDAPAESVAY-------H 520 530 540 550 560 930 940 950 960 mKIAA0 SKSLVPVYVKVRPQPEVAPK------------IPNKQ---KLTCPFCLSTFM--TADAYE ... .:: : :::.: : .: :. : ::.:.: . .:: mKIAA0 AQNNAPVPPK--PQPKVQEKADVPVKSSPQAAVPYKKDVGKTLCPLCFSILKGPISDALA 570 580 590 600 610 620 970 980 990 1000 1010 1020 mKIAA0 LHLKERHHVMPTVHTMLRSPAFKCIHCCGVYTGNMTLGAIAVHLLRCRSAPK-DSSSDLQ ::.:::.:. ::: . .. ..::::: ::::.::: ..:..::..::.. : ....: mKIAA0 HHLRERHQVIQTVHPVEKKLTYKCIHCLGVYTSNMTASTITLHLVHCRGVGKTQNGQDKT 630 640 650 660 670 680 1030 1040 1050 1060 1070 1080 mKIAA0 VQPGFIESSELLMVNGDVIPESTFPVKRKLPEGHLGPEDQRDGEEPQLTLDADASSGSEK :. ...: : :::: . .. .: :: :::. : :. mKIAA0 NAPSRLNQSPGLA-----------PVKRTYEQMEFPLLKKRKLEE-----DADSPSCFEE 690 700 710 720 1090 1100 1110 1120 1130 1140 mKIAA0 GLGAVPLKRQKSEIRTEGSGPSEDSLQALALDPSKYEGRSYEEKKQFLRDYFHRRPYPSR : : . :::::. .: ::: .:.:: ::...:::.: mKIAA0 K-------------------PEEPVV--LALDPKGHEDDSYEARKSFLTKYFNKQPYPTR 730 740 750 760 1150 1160 1170 1180 1190 1200 mKIAA0 KEVELLSSLLWVWKIDVASFFGKRRYICMKAIKTHKPSVLLGFDMSELKNVKHRLNFGEC .:.: :.. ::.:: :.:: :...: :.. . .::.:::::.:.::..:::...: mKIAA0 REIEKLAASLWLWKSDIASHFSNKRKKCVRDCEKYKPGVLLGFNMKELNKVKHEMDFDAE 770 780 790 800 810 820 mKIAA0 ESQKL mKIAA0 WLFENHDEKDSRVNASKTVDKKHNLGKEDDSFSDSFEHLEEESNGSGSPFDPVFEVEPKI 830 840 850 860 870 880 1208 residues in 1 query sequences 1767809 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:30:32 2006 done: Mon Mar 27 10:30:33 2006 Scan time: 1.170 Display time: 0.100 Function used was FASTA [version 3.4t11 Apr 17, 2002]