FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0898.ptfa, 1006 aa vs ./tmplib.26680 library 1768011 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.3631+/-0.0051; mu= 4.8589+/- 0.340 mean_var=157.1668+/-37.199, 0's: 0 Z-trim: 5 B-trim: 17 in 1/35 Lambda= 0.1023 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4179 ( 500 res) mid07007 ( 500) 240 48 4.7e-06 mKIAA0517 ( 787 res) mfj13077 ( 787) 180 39 0.0031 >>mKIAA4179 ( 500 res) mid07007 (500 aa) initn: 125 init1: 87 opt: 240 Z-score: 201.1 bits: 47.7 E(): 4.7e-06 Smith-Waterman score: 242; 24.561% identity (27.317% ungapped) in 228 aa overlap (82-303:56-266) 60 70 80 90 100 mKIAA0 QWMSRVWRALLRFSDVSFVWRNCGMLDCPHCSKLCCFSCIRRWL--TEQRAQCPHCRAPL :.. : .:: :: :. :: :: mKIAA4 ASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTS 30 40 50 60 70 80 110 120 130 140 150 160 mKIAA0 QLRELVNCRW---AEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICH . : : : :...::.:. :.. ... : .::: ::.::. .. .: mKIAA4 RYRSLRPNRQLGSMVEIAKQLQTV------KRKIRDESLCSQHHEPLSLFCYEDQEAVCL 90 100 110 120 130 170 180 190 200 210 220 mKIAA0 QCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAK ::. . : :: :. . ... :... . :...:.:. :.. .. mKIAA4 ICAI-SHTHRPHTVVPMDDATQEYKEKLQKCLEPLEQKLQEITCCKASEEKKPGELKRLV 140 150 160 170 180 190 230 240 250 260 270 280 mKIAA0 DERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEV-ESKSELISK . : ..: . : . ::: . :.: :.. : ...::.. :. ..: .. mKIAA4 ESRRQQILKEFEELHRRLDEE----------QQTLLSRLEEEEQDILQRLRENAAHLGDR 200 210 220 230 240 290 300 310 320 330 340 mKIAA0 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP .. . .:. : . : mKIAA4 RRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNFPRQYF 250 260 270 280 290 300 >>mKIAA0517 ( 787 res) mfj13077 (787 aa) initn: 101 init1: 76 opt: 180 Z-score: 150.5 bits: 39.0 E(): 0.0031 Smith-Waterman score: 210; 22.481% identity (26.126% ungapped) in 258 aa overlap (71-299:73-323) 50 60 70 80 90 100 mKIAA0 RVAEGPAESRRQWMSRVWRALLRFSDVSFVWRNCGMLDCPHCSKLCCFSCIRRWLTEQRA ..: .: : : : :.. .. . mKIAA0 RMASEGASIPSPVVRQIDKQFLICSICLERYKNPKVLPCLHT---FCERCLQNYIPAHSL 50 60 70 80 90 110 120 130 140 mKIAA0 --QCPHCRAPLQLRE--LVNCRWAEEVTQQLDTLQ------------LCSLTKHEENEKD .:: :: : : .. . .:. .:.:: : ..: .. mKIAA0 TLSCPVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNGEDSSILETVTAVAAGKPL 100 110 120 130 140 150 150 160 170 180 190 200 mKIAA0 KCENHHEK-LSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRR .: :: . . .: .:. .:..:. : :. : :: .. ::: .... .. . . mKIAA0 SCPNHDGNVMEFYCQSCETAMCRECTE--GEHAEHPTVPLKDVVEQHKASLQVQLDAVNK 160 170 180 190 200 210 210 220 230 240 250 260 mKIAA0 RLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITL---MGQKT :: :. : .: . . .. . : : : .:... . . :... . :. : .: : mKIAA0 RLPEIDSALQFISEIIHQLTNQKASIVDDIHSTFDELQKTLNVRKSVLLMELEVNYGLKH 220 230 240 250 260 270 270 280 290 300 310 mKIAA0 SLTQETELLESLLQ---EVESKSELISKS------SEILMMFQQVHRKPMASFVTTPVPP .. : :..::: ..: :.. ... .:.:.. .:. .: mKIAA0 KVLQSQ--LDTLLQGQESIKSCSNFTAQALNHGTETEVLLVKKQMSEKLNELADQDFPLH 280 290 300 310 320 330 320 330 340 350 360 370 mKIAA0 DFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLS mKIAA0 PRENDQLDFIVETEGLKKSIHNLGTILTTNAVASETVATGEGLRQTIIGQPMSVTITTKD 340 350 360 370 380 390 1006 residues in 1 query sequences 1768011 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:31:30 2006 done: Mon Mar 27 10:31:31 2006 Scan time: 1.020 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]