FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0392.ptfa, 593 aa
 vs ./tmplib.26680 library

1768424 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.9043+/-0.00384; mu= 19.6121+/- 0.257
 mean_var=73.3181+/-16.825, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1498

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4066  ( 112 res)   mid11058                   ( 112)  400   95 3.5e-21


>>mKIAA4066  ( 112 res)   mid11058                        (112 aa)
 initn: 427 init1: 199 opt: 400  Z-score: 472.7  bits: 95.1 E(): 3.5e-21
Smith-Waterman score: 404;  60.000% identity (65.347% ungapped) in 110 aa overlap (490-590:3-112)

     460       470       480       490       500       510         
mKIAA0 QAAKVMCRYQCFKSAWMFEVFHKGFSFPVTYKNLKTALQVYDKEVQWTLGAILYRTRFLP
                                     : ::.::  :::.:::::::::::.:::::
mKIAA4                             YDYPNLQTAQLVYDREVQWTLGAILYKTRFLP
                                           10        20        30  

     520         530       540       550       560       570       
mKIAA0 LRDIRQEV--FRAGHAHWRGVSFVYNHYLFSGCFLVVLLSILLYLLRLRRIHRRAPRTGS
       :::.::     : .:. :  .::::::::: .: :::::.:.:::::..:::::  :...
mKIAA4 LRDLRQGQGGVRPAHGSWLRLSFVYNHYLFFACTLVVLLAIVLYLLRIHRIHRRQTRASA
             40        50        60        70        80        90  

           580          590   
mKIAA0 ----LWMEEGLPS---QKGPGPL
           ::.:. .:    : ::   
mKIAA4 PLDLLWIEQVVPMIGVQVGP   
            100       110     




593 residues in 1 query   sequences
1768424 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:19:41 2006 done: Mon Mar 27 10:19:42 2006
 Scan time:  0.770 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]