FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0541.ptfa, 1166 aa
 vs ./tmplib.26680 library

1767851 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.5590+/-0.00506; mu= 15.2886+/- 0.341
 mean_var=110.4633+/-25.939, 0's: 0 Z-trim: 6  B-trim: 110 in 1/35
 Lambda= 0.1220

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4123  ( 639 res)   mbg05860                   ( 639)  150   38  0.0071


>>mKIAA4123  ( 639 res)   mbg05860                        (639 aa)
 initn: 128 init1: 101 opt: 150  Z-score: 144.0  bits: 37.7 E(): 0.0071
Smith-Waterman score: 150;  27.397% identity (32.000% ungapped) in 146 aa overlap (167-309:371-498)

        140       150       160       170       180       190      
mKIAA0 GSIIIVPATQTAIVQLLQGEHMLRRGWPPHRTLRGHRNKVTCLLYPHQVSARYDQRYLIS
                                     : : :: ..: ::        .::.: .:.
mKIAA4 YCLQYDDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSVLCL--------QYDERVIIT
              350       360       370       380               390  

        200       210       220       230       240       250      
mKIAA0 GGVDFSVIIWDIFSGEMKHIFCVHGGEITQLLVPPENCSARVQHCICSVASDHSVGLLSL
       :. : .: .::. .::: . .  :   . .:     : .  :    ::  .:.:... ..
mKIAA4 GSSDSTVRVWDVNAGEMLNTLIHHCEAVLHLRF---NNGMMVT---CS--KDRSIAVWDM
            400       410       420          430            440    

        260          270       280       290       300       310   
mKIAA0 REKKCIMLASR---HLFPIQVIKWRPSDDYLVVGCTDGSVYVWQMDTGALDRCAMGITAV
            : :      :   ..:. .  .: :.: .  : .. ::. .:  . :   :    
mKIAA4 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG
          450       460         470       480       490       500  

           320       330       340       350       360       370   
mKIAA0 EILNACDEAVPAAVDSLSHPAVNLKQAMTRRSLAALKNMAHHKLQTLATNLLASEASDKG
                                                                   
mKIAA4 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI
            510       520       530       540       550       560  




1166 residues in 1 query   sequences
1767851 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:22:43 2006 done: Mon Mar 27 10:22:44 2006
 Scan time:  1.120 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]