FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1078.ptfa, 813 aa vs ./tmplib.26680 library 1768204 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.0635+/-0.00855; mu= 0.3754+/- 0.566 mean_var=328.9828+/-78.950, 0's: 0 Z-trim: 6 B-trim: 104 in 1/35 Lambda= 0.0707 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1543 ( 985 res) mfj19328 ( 985) 713 87 1.3e-17 >>mKIAA1543 ( 985 res) mfj19328 (985 aa) initn: 1515 init1: 686 opt: 713 Z-score: 408.5 bits: 86.8 E(): 1.3e-17 Smith-Waterman score: 1251; 36.582% identity (51.092% ungapped) in 831 aa overlap (4-807:358-979) 10 20 30 mKIAA1 QPGSSASSSSGVKMTSFAEQKFRKLNHTDGKSS : :...: ::::::::.: ..: .....: mKIAA1 ENPSKSSPCSTGEILKPPPPSEGSPKAVASSPAANNSEVKMTSFAERK-KQLVKAEAES- 330 340 350 360 370 380 40 50 60 70 80 90 mKIAA1 GSSSQKTTPEGSELNIPHVVSWAQIPEEAGVAPGRDTTQLLASEMVHLRMRLEEKRRAIE : .: .:: ::: . :.::: .: :::::::::: mKIAA1 GLGSPTSTP---------------------VAP-----EALSSEMSELGARLEEKRRAIE 390 400 410 100 110 120 130 140 150 mKIAA1 AQKKKMEAAFTKQRQKMGRTAFLTVVKKKGEGISPLREEAAGAEDEKVYTDRAKERESQK :::...:: :.:.::..:..::: : .: .:::: .:.. . : mKIAA1 AQKRRIEAIFAKHRQRLGKSAFLQV--------QP--REAAGEAEEEAELGSVPGGERPA 420 430 440 450 460 160 170 180 190 200 210 mKIAA1 MDGQRSKSLADIKESMETPPGRWLKSPTTPVDPERQWNLTSPSEETLNEGEILEYTKSIE .:: :: ..:. : :: :: : . .:.... mKIAA1 GEGQGEPSLR--HKSVTFSPD------LGPVPPE---------------G-LGDYNRAVS 470 480 490 500 220 230 240 250 260 270 mKIAA1 KLNSSLHFLQQEMQRLSLQQEMLMQMREQQAWVISPPQPSPQKQIRDFKPRQAGLSSAAA ::...: ::..::::. ::. :. : . : : : . : : .::. mKIAA1 KLSAALSSLQRDMQRLTDQQQRLLAPPEAPG-----PAPPPAAWV---IPGPATGPKAAS 510 520 530 540 550 280 290 300 310 320 330 mKIAA1 PFSSDSPRPTHPSPQSSTRKSASFSVKNQRTPRPNELKITPLNRTLTPPRSVDSLPRLRR : :: :. . : . : . .. . :: :::..::.:.::::..:::::.::. mKIAA1 P----SPARRAPAARRSPGPGPSPTPRSPKHARPAELKLAPLTRVLTPPHDVDSLPHLRK 560 570 580 590 600 610 340 350 360 370 380 390 mKIAA1 FSPSQVPIQTRSFVCFGDDGEPQKEPKQKEEIKKEPSECKGTLGPCDHNPGEKEIKPVES :::::::.:::: . ... : : .:: : :. :: :. : mKIAA1 FSPSQVPVQTRSSILLSE-GTPPEEPTTK--------------------PALIEI-PLAS 620 630 640 650 400 410 420 430 440 450 mKIAA1 TVSEVLSQPITETVCVTPNEDQLSQPTEPPPKPVFPPTAPKNVNLIEVSLSDLKPPEKAD :..: .. :. .: .:: : mKIAA1 -----LGEPAAD-------EE-----------------------------GDGSPPGAED 660 670 460 470 480 490 500 510 mKIAA1 VSVEKLDGESDKEQFDDDQKVCCGFFFKDDQKAENDMAMKRAALLEKRLRREKETQLRKQ .:. :...: . . :::.::..: :..::.:::.:::.. :: .:.. ::: mKIAA1 ----SLEEEASSE---GEPRSGLGFFYKDEDKPEDEMAQKRASLLERQQRRVEEARRRKQ 680 690 700 710 720 520 530 540 mKIAA1 QLEAEMEHKKEETRRKTEEE--------------------------RQKKEDERARR-EF ::: :.:.::. : ..: .:. :: .: mKIAA1 WQEAEKEQKREEAARLAQEAPGLAFTTPVVASAAPVATLAPTTRAMAPAEEEVGPRRGDF 730 740 750 760 770 780 550 560 570 580 590 600 mKIAA1 IRQEYMRRKQLKLMEDMDTVIKPRPQAAKQKKQRPKSIHRDHIESPKTPIKGPPGSRISR : :: :: :::::.:.: :..:: ... : :: mKIAA1 TRLEYERRAQLKLMDDLDKVLRPRASGT-----------------------GGPG----- 790 800 810 610 620 630 640 650 660 mKIAA1 VFSVSSLSLASLNTGDSESVHSGKRTPRSESVEGFLSPSRCGSRNGEKDWENASTTSSVA ..:.:. : : :.: : ... . : : mKIAA1 --------------------RGGRRATR---------P-----RSGCCD--DSALARSPA 820 830 670 680 690 700 710 720 mKIAA1 SGTEYTGPKLYKEPSAKSNKHIIQNALAHCCLAGKVNEGQKKKILEEMEKSDANNFLILF : ::.::::::::::: ::.:::.:::::::::: ::..::::.::: ::.::::: mKIAA1 RGL-LGGPRLYKEPSAKSNKFIIHNALSHCCLAGKVNEPQKNRILEEIEKSKANHFLILF 840 850 860 870 880 890 730 740 750 760 770 780 mKIAA1 RDSGCQFRSLYTYCPETEEINKLTGIGPKSITKKMIEGLYKYNSDRKQFSHIPAKTLSAS :::.::::.::: ::::...:.: ::...: :.::.::::::::.:..:::::.: : mKIAA1 RDSSCQFRALYTLSGETEELSRLAGYGPRTVTPAMVEGIYKYNSDRKRFTQIPAKTMSMS 900 910 920 930 940 950 790 800 810 mKIAA1 VDAITIHSHLWQTKRPVTPKKLLPTKA :::.::..::::.:.:.:::: mKIAA1 VDAFTIQGHLWQSKKPTTPKKGGGTPK 960 970 980 813 residues in 1 query sequences 1768204 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:33 2006 done: Mon Mar 27 10:35:34 2006 Scan time: 0.940 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]