FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0067.ptfa, 1162 aa
 vs ./tmplib.26680 library

1767855 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 12.7907+/-0.0088; mu= -20.7066+/- 0.580
 mean_var=494.2617+/-122.848, 0's: 0 Z-trim: 4  B-trim: 2 in 1/35
 Lambda= 0.0577

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1876  ( 348 res)   mpj00624                   ( 348)  281   38  0.0025


>>mKIAA1876  ( 348 res)   mpj00624                        (348 aa)
 initn: 543 init1: 271 opt: 281  Z-score: 152.0  bits: 38.3 E(): 0.0025
Smith-Waterman score: 381;  35.912% identity (39.877% ungapped) in 181 aa overlap (555-731:53-219)

          530       540       550       560       570        580   
mKIAA0 DFLFLEMFCLDPYVLVDRKFQPFKPFYYILDITYGKEDVPLSCVNEIDTTP-PPQVAYSK
                                     ::. : : .:. ::: .:.   : .  : .
mKIAA1 SQVWSALQMSKALRDSAPDKPVAVEKTVSRDIARGYERIPIPCVNAVDSELCPTNYKYVS
             30        40        50        60        70        80  

           590       600       610        620         630       640
mKIAA0 ERIPGKGVFINTGPEFLVGCDCKDGCRDK-CACHQLTIQATAC--TPGGQVNPNSGYQYK
       .    . . :. .   :  : : : : .. : : ::...   :     :.. :    ...
mKIAA1 QNCVTSPMNIDRNITHLQYCVCVDDCSSSTCMCGQLSMR---CWYDKDGRLLP----EFN
             90       100       110       120          130         

              650       660       670       680       690       700
mKIAA0 RLEECLPTGVYECNKRCNCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSF
         :   :  ..:::. :.:  : : ::.::.::..::::..::. :::.: :.::  :.:
mKIAA1 MAE---PPLIFECNHACSCWRN-CRNRVVQNGLRARLQLYRTQDMGWGVRSLQDIPLGTF
            140       150        160       170       180       190 

              710       720       730       740       750       760
mKIAA0 VCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDVPTSSDSSGVDMKDQ
       :: :.:....:. ::   ..  : :. .::.                             
mKIAA1 VCEYVGELISDSEAD---VREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLV
             200          210       220       230       240        

              770       780       790       800       810       820
mKIAA0 EDGNSGSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENELSEMTSKDSR
                                                                   
mKIAA1 PVRVFMSHQDLRFPRIAFFSTRLIQAGEQLGFDYGERFWDVKGKLFSCRCGSSKCRHSSA
      250       260       270       280       290       300        




1162 residues in 1 query   sequences
1767855 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:11:33 2006 done: Mon Mar 27 10:11:34 2006
 Scan time:  1.100 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]