FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1179.ptfa, 1170 aa
 vs ./tmplib.26680 library

1767847 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.0706+/-0.00457; mu= 21.7984+/- 0.306
 mean_var=90.2882+/-20.500, 0's: 0 Z-trim: 1  B-trim: 3 in 1/35
 Lambda= 0.1350

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1638  ( 955 res)   mbh04301                   ( 955)  173   45 7.2e-05


>>mKIAA1638  ( 955 res)   mbh04301                        (955 aa)
 initn: 137 init1:  94 opt: 173  Z-score: 179.7  bits: 44.9 E(): 7.2e-05
Smith-Waterman score: 178;  21.830% identity (27.487% ungapped) in 481 aa overlap (73-526:347-755)

             50        60        70        80        90       100  
mKIAA1 EVMVTEGVTTVAYTLDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEAMWKTLSKLALE
                                     :  . .:: ... :  :. . . :..  : 
mKIAA1 STKLPFSHKPLLLYNGELTCQTQSGKINSIYLSTHSFLGSMKDTEPTD-LRQMLTQTLLL
        320       330       340       350       360        370     

            110            120       130       140                 
mKIAA1 ARQLHTAERC-----FSALGHVAKARFLHETNEIADQVSREYGGEGT-----------DF
        :   . . :      .. ...::: . :   :.: .::: .:  ::           :.
mKIAA1 KRFSDAWDICKMLNDRTSWSELAKACLHHMEVEFAIRVSRTMGDVGTVMSLEQIKGIEDY
         380       390       400       410       420       430     

        150       160       170       180       190       200      
mKIAA1 YQVRARLAMLEKNYKLAEMIFLEQNAVEEAMDMYQELHRWEECIAVAEAKGHPALEKLRR
         . ..:::. ....::. ..: .:    :..: ..:..:.  . .:.        .:  
mKIAA1 NLLAGHLAMFTNDFNLAQDLYLASNCPVAALEMRRDLQHWDSALQLAK--------RLAP
         440       450       460       470       480               

        210       220       230       240       250       260      
mKIAA1 DYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPAKAARLVLTREELLANTELVEH
       :   ..    ..: : .: :  :: . :.. : : :. .   .     :  ::.   : .
mKIAA1 DQIPFI----SKEYAIQL-EFTGDYVNALAHYEK-GITGDNKE---HDEVCLAG---VAQ
       490           500        510        520          530        

        270       280       290       300       310       320      
mKIAA1 ITTALIKGELYERAGDLFEKIRNPQRALECYCKGNAFMKAVELARLAFPVEVVRLEEAWG
       ..  .  :.. . :.   . ...:.:.:.  :  .:... ..     :  :...: :   
mKIAA1 MSIRM--GDIRRGAN---QALKHPSRVLKRDC--GAILENMK----QFS-EAAQLYE---
         540            550       560         570            580   

        330       340       350       360       370       380      
mKIAA1 DHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPRVAQH
           . .  : : . ::  ::           ..: :.  .:     ...:   :..  .
mKIAA1 ----KGQYYDRAASVYI--RC-----------KNWAKVGELLP----HVSS---PKIHLQ
                  590                    600           610         

        390       400       410       420         430       440    
mKIAA1 YASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKV--EHGQCPRGKNVSVLYITQA
       ::. .: .          : :.:.  : .: .:... ..  .: . :. : ::..  ::.
mKIAA1 YAKAKEAD---------GRYKEAVVAYENAKQWNSVIRIYLDHLNNPE-KAVSIVRETQS
        620                630       640       650        660      

          450               460       470       480       490      
mKIAA1 QEMEKQ--------GKYREAERLYVTVEEPDLAITMFKKHKLYDDMIRLVGKHHPDLLSD
        .  :.        : :  : .. :  .  . :.:. ..:. .. .  ..: .  :  ..
mKIAA1 LDGAKMVARFFLQLGDYGSAIQFLVLSKCNNEAFTLAQQHNKMEIYADIIGAE--DTTNE
        670       680       690       700       710         720    

        500       510        520       530       540       550     
mKIAA1 THLHLGKELEAEGR-LQEAEYHYLEAQEWKATVNMYRSSGLWEEAYRVAKAHGGANAHKH
        .  ..  .:.: : .: ...  : .:  .:                             
mKIAA1 DYQSIALYFEGEKRHFQAGKFFLLCGQYSRALKHFLKCPSSEDNVAIEMAIETVGQAKDE
          730       740       750       760       770       780    

         560       570       580       590       600       610     
mKIAA1 VAYLWAKSLGGEAAVRLLNKLGLLEATIDHAADNKASVLDSTAPMSPILGRFVHNQDWEA
                                                                   
mKIAA1 LLTNQLIDHLMGESDGMPKDAKYLFRLYMALKQYREAARTAIIIAREEQSAGVFRNAHDV
          790       800       810       820       830       840    




1170 residues in 1 query   sequences
1767847 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:37:52 2006 done: Mon Mar 27 10:37:53 2006
 Scan time:  1.110 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]