FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0122.ptfa, 860 aa vs ./tmplib.26680 library 1768157 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.6266+/-0.00641; mu= 5.4807+/- 0.428 mean_var=220.4478+/-51.494, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.0864 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4015 ( 1109 res) mfj41118 (1109) 496 75 4.9e-14 >>mKIAA4015 ( 1109 res) mfj41118 (1109 aa) initn: 880 init1: 289 opt: 496 Z-score: 344.4 bits: 75.2 E(): 4.9e-14 Smith-Waterman score: 766; 26.130% identity (35.693% ungapped) in 907 aa overlap (3-858:393-1107) 10 20 30 mKIAA0 NSYQDMEYERRGGR--GDRTGRYGATDRSQDD :...:: : :.. :: . .: .. mKIAA4 KLSGGEQQSSDAGLFKEEGDLDFLGQQDTDYRSIEYCDVDHRLPGNQIFGYGQS-KSFSQ 370 380 390 400 410 420 40 50 60 70 80 mKIAA0 SGENRSRDHDYRDMDYRSYPREYGSQEGKHEYDDSSEEQSAEIRGQLQ-SHGVQAREVRL . .:. ..: .:.:::. : : .. . . . :: . .. : :. .....: mKIAA4 GKMSRDAQQDLQDQDYRTGPSEEKPNRLIRLSGVPENATKEEILNAFRTSDGIPVKDLQL 430 440 450 460 470 480 90 100 110 120 130 140 mKIAA0 MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKINEDWLCNK .. ..: . :.. :::: :.:: ::::: .: : ..:...: :.: . : : : mKIAA4 -KEYNTGYDYGYVCVEFSLLEDAIGCMEANQGTLMIHDKEVTLEYV-PSPDF---WYC-K 490 500 510 520 530 150 160 170 180 190 200 mKIAA0 QCGVQNFKRREKCFKCGVPKSEAEQKLPLGTRLDQQALPLGGRELSQGLLPLPQPYQAQG .: ... .. .: : :: :..:.: . .. ..:. ... . : . .. . mKIAA4 RCKASTGGHQSSCSFCKGPKEEVKQELVSYPQPQKTSIPVPSEKQPNQPRPADKEHELRK 540 550 560 570 580 590 210 220 230 mKIAA0 VLTSQALSQG-------------------------SEP-SSENAND----TIILRNLNPH .: : .:: :... .: ::.:. . mKIAA4 REEGQESRLGHQKRDTERYFPHSRREGLTFRRDREKEPWSGDSRQDGESKTIMLKRIYRS 600 610 620 630 640 650 240 250 260 270 280 290 mKIAA0 STMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIVVRAAQLLQILQALHPP . . :. .: ::. :...:::.::.. ... ..::.:.. . .: ....::: : :: mKIAA4 TPPEVIVEVLEPYVHLTTANVRIIKNRTGPMGHTYGFIDLDSHA-EALRVVKILQNLDPP 660 670 680 690 700 710 300 310 320 330 340 350 mKIAA0 LTIDGKTINVEFAKGSKRDMASNEGSRINAASVASTAIAAAQWAISQASQGGESAWAAPE ..:::: . :..: :..:. ..: .: mKIAA4 FSIDGKMVAVNLATGKRRN-----------------------------DSGDHS------ 720 730 360 370 380 390 400 410 mKIAA0 EPPVDYSYYQQDEGYGSSQGTDSLYAHGYLKNSKGPGMTGTKGDPAGTGPEASLEAGADS :. .: : . : ... .: :.. mKIAA4 ----DHMHYYQGKKY--------------FRDRRG----GNR------------------ 740 750 420 430 440 450 460 470 mKIAA0 VSLQAFSRAQPGAAPGLYQQSAEGSSGQSTATNSQSYTIISPAVLKAELQSPTQPSSSAF .: :. :: :. : ::: mKIAA4 ------------------------NSDWSSDTNRQG-----------------QQSSS-- 760 770 480 490 500 510 520 530 mKIAA0 PPATSPTAPEAYSQYPVPDVSTYQYDETSGYYYDPQTGLYYDPNSQYYYNAQSQQYLYWD . : :: :.:::::: .: :::::.: mKIAA4 --------------------DCYIYDSTTGYYYDPLAGTYYDPNTQ-------------- 780 790 800 540 550 560 570 580 590 mKIAA0 GERRTYIPALEQSADGHK-DTGASSKEGKEKKEKHKTKTAQQIAKDMERWARSLNKQKEN ...:.: .: : .. :...:: ...:. .: . :: :...: .:. mKIAA4 --QEVYVPQDPESPDEEEIKEKKSTSQGKSNSKKETSKRDGKEKKD-----RGMTKFQES 810 820 830 840 850 600 610 620 630 640 650 mKIAA0 FKNSFQPISALRDDERRESATADAGYAILEKKGALAERQHTSMDLPKLASDDRPSPPRGL ... : :.: ...: . ... : ::... : :: mKIAA4 TSEGKPP---LED--------------VFKKPLPPTVKKEESPPPPKVVN-----PLIGL 860 870 880 890 660 670 680 690 700 mKIAA0 VAAYSGESD--SEEEQERGGP------EREE---------KLTDWQKLACLLCRRQFPSK .. :.:.:: :::.:.. : ::: :::::.::::::::::::.: mKIAA4 LGEYGGDSDYEEEEEEEQAPPVQPQPQPREEMTKKENEDDKLTDWNKLACLLCRRQFPNK 900 910 920 930 940 950 710 720 730 740 750 760 mKIAA0 EALIRHQQLSGLHKQNLEIHRRAHLSENELEALEKNDMEQMKYRDRAAERREKYGIPEPP :.: .::::: ::::::::::. . ::.:: ::. . : ...... .:::: . : mKIAA4 EVLTKHQQLSDLHKQNLEIHRKIKQSEQELAYLERREREG-RFKEKGNDRREKLQSFDSP 960 970 980 990 1000 1010 770 780 790 800 810 820 mKIAA0 EPKRRKYGGISTASVDFEQPTRDGLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQ : :: ::. .. : . .. ... :. :: ::..:.::: .. :. . : . mKIAA4 ERKRIKYS--RETDSDRNPVDKEDTDTSSKGGCAQQATGWRKGAGLGYSHPGLGSSEEIE 1020 1030 1040 1050 1060 1070 830 840 850 860 mKIAA0 TRVRGSGLGARGSSYGVTSTESYKETLHKTMVTRFNEAQ :.:: : : : . :.:.:.......: .:..: mKIAA4 GRMRGPGGGPPGRTSKRQSNETYRDAVRRVMFARYKELD 1080 1090 1100 860 residues in 1 query sequences 1768157 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:12:34 2006 done: Mon Mar 27 10:12:35 2006 Scan time: 0.960 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]