FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0551.ptfa, 453 aa vs ./tmplib.26680 library 1768564 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.2827+/-0.00482; mu= 11.9682+/- 0.323 mean_var=107.4523+/-24.149, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.1237 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4090 ( 483 res) mej00160 ( 483) 1650 305 6.6e-84 mKIAA0687 ( 1310 res) mpg00180 (1310) 1654 306 7.8e-84 >>mKIAA4090 ( 483 res) mej00160 (483 aa) initn: 1708 init1: 1641 opt: 1650 Z-score: 1598.7 bits: 305.1 E(): 6.6e-84 Smith-Waterman score: 1721; 69.309% identity (76.338% ungapped) in 391 aa overlap (90-453:31-412) 60 70 80 90 100 110 mKIAA0 RLIPTGAPGNNEQYNMGMVGTHGLETSHADTFGGSISREGTLMIRETAEEKKRSGHSDSN ..:: ::.....: ::.. .::: mKIAA4 RGGGGRRWGDTDSVSTMVVHDVEEISGTQPSYGG-----GTMVVQRTPEEERSLLLADSN 10 20 30 40 50 120 130 140 150 160 mKIAA0 GFAGHINLPDLVQQSHSPA------GTPTE---------GLGRV---STHSQEMDSGAES :.. ::::.:: ::::. . ::. :: .. :. .. .: : . mKIAA4 GYT---NLPDVVQPSHSPTENSKGQSPPTKDGGSDYQSRGLVKAPGKSSFTMFVDLGIYQ 60 70 80 90 100 110 170 180 190 200 210 mKIAA0 ---------LKALFTSELLRQEQAKLNEARKISVVNVNPTNIRPHSDTPEIRKYKKRFNS . :: .: : .: ... .:: ::::::::: : ::.::::::::::::: mKIAA4 PGGSGDTIPITALVGGEGGRLDQLQFD-VRKGSVVNVNPTNTRAHSETPEIRKYKKRFNS 120 130 140 150 160 170 220 230 240 250 260 270 mKIAA0 EILCAALWGVNLLVGTENGLMLLDRSGQGKVYNLINRRRFQQMDVLEGLNVLVTISGKKN ::::::::::::::::::::::::::::::::.::.::::::::::::::.:.:::::.: mKIAA4 EILCAALWGVNLLVGTENGLMLLDRSGQGKVYGLIGRRRFQQMDVLEGLNLLITISGKRN 180 190 200 210 220 230 280 290 300 310 320 330 mKIAA0 KLRVYYLSWLRNRILHNDPEVEKKQGWITVGDLEGCIHYKVVKYERIKFLVIALKNAVEI ::::::::::::.:::::::::::::: ::::.::: ::.::::::::::::::::.::. mKIAA4 KLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDMEGCGHYRVVKYERIKFLVIALKNSVEV 240 250 260 270 280 290 340 350 360 370 380 390 mKIAA0 YAWAPKPYHKFMAFKSFADLQHKPLLVDLTVEEGQRLKVIFGSHTGFHVIDVDSGNSYDI :::::::::::::::::::: :.:::::::::::::::::.:: .:::..:::::::::: mKIAA4 YAWAPKPYHKFMAFKSFADLPHRPLLVDLTVEEGQRLKVIYGSSAGFHAVDVDSGNSYDI 300 310 320 330 340 350 400 410 420 430 440 450 mKIAA0 YIPSHIQGNITPHAIVILPKTDGMEMLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVGR ::: :::..::::::..::.:::::::.::::::::::::::: ::::::::::::::. mKIAA4 YIPVHIQSQITPHAIIFLPNTDGMEMLLCYEDEGVYVNTYGRIIKDVVLQWGEMPTSVAY 360 370 380 390 400 410 mKIAA0 L . mKIAA4 ICSNQIMGWGEKAIETRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVY 420 430 440 450 460 470 >>mKIAA0687 ( 1310 res) mpg00180 (1310 aa) initn: 1947 init1: 1647 opt: 1654 Z-score: 1597.5 bits: 306.3 E(): 7.8e-84 Smith-Waterman score: 1898; 63.327% identity (70.852% ungapped) in 499 aa overlap (1-453:748-1239) 10 20 30 mKIAA0 DLTALAKELRELRIEETNRPLKKVTDYSSS :::::::::: . : :: .:::::::: mKIAA0 GSPSPRQESAAKKPDDKKEVFRPLKPAGEVDLTALAKELRAV---EDVRPPHKVTDYSSS 720 730 740 750 760 770 40 50 60 70 80 mKIAA0 SEESESSEEEEEDGESETHDGTVAVSDIPRLIPTGAPGNNEQYNMGMVGTHG-LETSHAD :::: ...::::: :.: : ... . : . .:.: .. . .: .:. : mKIAA0 SEESGTTDEEEEDVEQEGADDSTSGPEDTRAASSPNLSNGETESVKTMIVHDDVESEPAM 780 790 800 810 820 830 90 100 110 120 130 mKIAA0 TFGGSISREGTLMIRETAEEKKRSGHSDSNGFAGHINL-PDLVQQSHS---------PAG : :.::::..:... ..::..: .::::::.:.: :::.::::: :.. mKIAA0 T----PSKEGTLIVRQSTVDQKRASHHESNGFAGRIHLLPDLLQQSHSSSTSSTSSSPSS 840 850 860 870 880 890 140 150 160 mKIAA0 ----------TPTEGLGRVSTHSQE---------------MD---------SGAESLKAL :: . : :.: .: ::. ... mKIAA0 SQPTPTMSPQTPQDKLTANETQSASSTLQKHKSSSSFTPFIDPRLLQISPSSGTTVTSVV 900 910 920 930 940 950 170 180 190 200 210 220 mKIAA0 -FTSELLRQEQAKLNEARKISVVNVNPTNIRPHSDTPEIRKYKKRFNSEILCAALWGVNL :. . :: : . . .:: ::::::::: ::.::::::::::::::::::::::::::: mKIAA0 GFSCDGLRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNL 960 970 980 990 1000 1010 230 240 250 260 270 280 mKIAA0 LVGTENGLMLLDRSGQGKVYNLINRRRFQQMDVLEGLNVLVTISGKKNKLRVYYLSWLRN :::::.:::::::::::::: ::.:::::::::::::::::::::::.:::::::::::: mKIAA0 LVGTESGLMLLDRSGQGKVYPLISRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRN 1020 1030 1040 1050 1060 1070 290 300 310 320 330 340 mKIAA0 RILHNDPEVEKKQGWITVGDLEGCIHYKVVKYERIKFLVIALKNAVEIYAWAPKPYHKFM .:::::::::::::: ::::::::.::::::::::::::::::..::.:::::::::::: mKIAA0 KILHNDPEVEKKQGWTTVGDLEGCVHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFM 1080 1090 1100 1110 1120 1130 350 360 370 380 390 400 mKIAA0 AFKSFADLQHKPLLVDLTVEEGQRLKVIFGSHTGFHVIDVDSGNSYDIYIPSHIQGNITP :::::..: :::::::::::::::::::.:: .:::..:::::. ::::.:.::: .: : mKIAA0 AFKSFGELLHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSIKP 1140 1150 1160 1170 1180 1190 410 420 430 440 450 mKIAA0 HAIVILPKTDGMEMLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVGRL :::.:::.:::::.::::::::::::::::::::::::::::::::. . mKIAA0 HAIIILPNTDGMELLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQTMGWGEK 1200 1210 1220 1230 1240 1250 mKIAA0 AIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVYFMTLGRTSLLSW 1260 1270 1280 1290 1300 1310 453 residues in 1 query sequences 1768564 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:22:58 2006 done: Mon Mar 27 10:22:59 2006 Scan time: 0.670 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]