FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0240.ptfa, 932 aa
 vs ./tmplib.26680 library

1768085 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.6277+/-0.00704; mu= -5.6383+/- 0.464
 mean_var=324.9616+/-80.187, 0's: 0 Z-trim: 7  B-trim: 0 in 0/36
 Lambda= 0.0711

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4035  ( 512 res)   mib01028                   ( 512)  449   60 7.8e-10


>>mKIAA4035  ( 512 res)   mib01028                        (512 aa)
 initn: 424 init1: 397 opt: 449  Z-score: 268.9  bits: 60.2 E(): 7.8e-10
Smith-Waterman score: 449;  47.093% identity (48.795% ungapped) in 172 aa overlap (545-714:15-182)

          520       530       540       550       560       570    
mKIAA0 ATLGATQAQPESSVGSSPSQTAVQVDSHPGQKRPAAKQLTKGAFILQQLQRDQAHAVTPD
                                     .:.:   : .: : .:..:.. :. .. ::
mKIAA4                 PFLLPQYDSKLCSLKKQPLL-QPSKEACFLEHLHKHQGSVLHPD
                               10        20         30        40   

           580       590       600       610       620       630   
mKIAA0 -KSQFRSLNDTVQRLLSYHVCQGSMPTEEDLRQVDNEFEEVATQLLKRTQAMLNKYRFLL
        :. : :..:...::: ::: ::..:. .: ..::.::: :.:::::::::::::::.::
mKIAA4 YKTAFPSFEDALHRLLPYHVYQGALPSPNDYHKVDEEFETVSTQLLKRTQAMLNKYRLLL
            50        60        70        80        90       100   

           640       650       660       670       680       690   
mKIAA0 LEDAMRINPSAEMVMIDRMFNQEERASLSRDKRLALVDPEGFQADFCCSFKLDEAVP-ET
       ::.. :..:::::::::::: :::...:. ::.::   :. . ..   : .:   ::  .
mKIAA4 LEESRRVSPSAEMVMIDRMFIQEEKTTLALDKQLAKEKPDEYVSS---SRSLGFPVPVSS
           110       120       130       140          150       160

            700       710       720       730       740       750  
mKIAA0 PLDRSDQHRSKTSSLHQVPRAQSRDRAKPGMAEATNHDQFHLVPNHIVVSAEGNISKKSE
          :  .: ...::  .   ::                                      
mKIAA4 EGHRLPSHGQSSSSSTSGTSAQPPPHLPTKLVIRHGGAGGSPSVTWARASSSLSSTSSSS
              170       180       190       200       210       220




932 residues in 1 query   sequences
1768085 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:15:34 2006 done: Mon Mar 27 10:15:35 2006
 Scan time:  0.980 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]