FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0357.ptfa, 1471 aa vs ./tmplib.26680 library 1767546 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.8472+/-0.00398; mu= 23.2781+/- 0.267 mean_var=79.9991+/-17.959, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.1434 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA3028 ( 1661 res) mtg01195 (1661) 2513 531 6.5e-151 mKIAA0325 ( 1999 res) mbg00515 (1999) 278 69 1.1e-11 mKIAA1899 ( 828 res) mph04252 ( 828) 161 44 0.00013 >>mKIAA3028 ( 1661 res) mtg01195 (1661 aa) initn: 2510 init1: 2510 opt: 2513 Z-score: 2801.7 bits: 531.2 E(): 6.5e-151 Smith-Waterman score: 2513; 70.414% identity (70.414% ungapped) in 507 aa overlap (965-1471:1-507) 940 950 960 970 980 990 mKIAA0 WKDGLFSSIMRELAIISHDGPKWILLDGDIDPMWIESLNTVMDDNKVLTLASNERIPLNP ::::::::::::::::::::::::::::: mKIAA3 DPMWIESLNTVMDDNKVLTLASNERIPLNR 10 20 30 1000 1010 1020 1030 1040 1050 mKIAA0 TMRLLFEISHLRTATPATVSRAGILYINPADLGWNPPVSSWIDQREVQTERANLTILFDK ::::.::::::::::::::::::::::::::::::: :::::..:.::.:.::: ::::: mKIAA3 TMRLVFEISHLRTATPATVSRAGILYINPADLGWNPVVSSWIERRKVQSEKANLIILFDK 40 50 60 70 80 90 1060 1070 1080 1090 1100 1110 mKIAA0 YLPTCLDTLRTRFKKIIPVPEQSMIQMLCYLLECLLTKEDIPADCPKEIYELYFVFAAIW ::::::: :: ::.: :::: ..:: . ::::::::... : : :::.:::::::: .: mKIAA3 YLPTCLDKLRIGFKRITPVPEITVIQTILYLLECLLTEKNAPPDSPKELYELYFVFACFW 100 110 120 130 140 150 1120 1130 1140 1150 1160 1170 mKIAA0 AFGSAVIQDQLVDYRAEFSKWWLTEFKTVKFPSQGTVFDYYIDPETKKFEPWAKLIPQFE :::.:..::::.:::.::::::..::::.:.:::::.:::::::::::: ::. .:.:: mKIAA3 AFGGAMFQDQLIDYRVEFSKWWINEFKTIKLPSQGTIFDYYIDPETKKFLPWTDKVPNFE 160 170 180 190 200 210 1180 1190 1200 1210 1220 1230 mKIAA0 FDPEMPLQACLVHTSETIRVCYFMERLMQWRRPVMLVGPAGSGKSVLVGAKLSSLNPEEY .::..:::: ::::.::::. ::.. ::. :::::: ::.:::::.: :: .:. ..: mKIAA3 LDPDIPLQASLVHTTETIRIRYFIDLLMEKAWPVMLVGNAGTGKSVLMGDKLENLSTDDY 220 230 240 250 260 270 1240 1250 1260 1270 1280 1290 mKIAA0 MVKNVPFNYYTTSAMLQAVLEKPLEKKAGRNYGPPGNRKLIYFIDDMNMPEVDAYGTVQP .:. ::::.::::::::.:::::::::.::::::::..::::::::::::::: :::: : mKIAA3 LVQAVPFNFYTTSAMLQGVLEKPLEKKSGRNYGPPGTKKLIYFIDDMNMPEVDKYGTVAP 280 290 300 310 320 330 1300 1310 1320 1330 1340 1350 mKIAA0 HTVIRQHLDYGHWYDRNKLSLKEIMNVQYISCMNPTAGSFTINPRLQRHFSVFALCFPGA ::.::::.:. :::::.::.::.. : ::..:::::.:::::.::::::: :::. ::: mKIAA3 HTLIRQHMDHRHWYDRQKLTLKDVHNCQYVACMNPTSGSFTIDPRLQRHFCVFAVSFPGQ 340 350 360 370 380 390 1360 1370 1380 1390 1400 1410 mKIAA0 DALSSIYSTILTHHLKFGNFPTTLQKSIPPLINLAVTFHQKIATTFLPTAIKFHYIFNLR .::.:::.:::..::.: . : ..:. :.. :...:::...:::::::::::::::: mKIAA3 EALTSIYNTILAQHLSFRSAPLVIQRLSSHLVTAALALHQKVSATFLPTAIKFHYIFNLR 400 410 420 430 440 450 1420 1430 1440 1450 1460 1470 mKIAA0 DFANIFQGILFSSVECVKSTQDLVKLYLHESSRVYRDKMVEEKDFNLFDKIQTEFLK :..:::::::::..: .:. :::.:.:::. ::: ::::.::: . . .. .: mKIAA3 DLSNIFQGILFSTAEILKTPLDLVRLWLHEAERVYGDKMVDEKDQETLHRVTIASVKKFF 460 470 480 490 500 510 mKIAA3 DDLGEENLFAKPNIFCHFTQGIGDPKYFPVTDVAQLNKLLKDVLDSYNEVNAVMNLVLFE 520 530 540 550 560 570 >>mKIAA0325 ( 1999 res) mbg00515 (1999 aa) initn: 177 init1: 132 opt: 278 Z-score: 302.1 bits: 69.0 E(): 1.1e-11 Smith-Waterman score: 278; 26.667% identity (27.957% ungapped) in 195 aa overlap (1274-1464:12-201) 1250 1260 1270 1280 1290 1300 mKIAA0 YTTSAMLQAVLEKPLEKKAGRNYGPPGNRKLIYFIDDMNMPEVDAYGTVQPHTVIRQHLD :. : :..:.:..: ::: . . ::: .. mKIAA0 VVLAPVQLGKWLVLFCDEINLPDMDKYGTQRVISFIRQMVE 10 20 30 40 1310 1320 1330 1340 1350 1360 mKIAA0 YGHWYDRNKLSLKEIMNVQYI-SCMNPT-AGSFTINPRLQRHFSVFALCFPGADALSSIY .: .: . . .. .:.. .: :: : .. :. :: : . .:: .:..:: mKIAA0 HGGFYRTSDQTWVKLERIQFVGACNPPTDPGRKPLSHRFLRHVPVVYVDYPGPASLTQIY 50 60 70 80 90 100 1370 1380 1390 1400 1410 1420 mKIAA0 STILTHHLKFGNFPTTLQKSIPPLINLAVTFHQKIATTFLPTAIKFHYIFNLRDFANIFQ .:. :.. .:. :. :: : :. : . . :::.. :... . mKIAA0 GTFNRAMLRL--IPS-LRTYAEPLTAAMVEFYTMSQERFTQDT-QPHYIYSPREMTRWVR 110 120 130 140 150 1430 1440 1450 1460 1470 mKIAA0 GILFSSVECVKS--TQDLVKLYLHESSRVYRDKMVEEKDFNLFDKIQTEFLK :: : ... ... .. :.... ::. :...:..::... :. mKIAA0 GI-FEALRPLETLPVEGLIRIWAHEALRLFQDRLVEDEERRWTDENIDMVALKHFPNIDK 160 170 180 190 200 210 mKIAA0 EKAMSRPILYSNWLSKDYIPVDQEELRDYVKARLKVFYEEELDVPLVLFNEVLDHVLRID 220 230 240 250 260 270 >>mKIAA1899 ( 828 res) mph04252 (828 aa) initn: 290 init1: 161 opt: 161 Z-score: 175.1 bits: 44.2 E(): 0.00013 Smith-Waterman score: 280; 25.148% identity (28.146% ungapped) in 338 aa overlap (89-399:419-747) 60 70 80 90 100 110 mKIAA0 HPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDRLWHDKYTLRKSMIPSFITMDQSRKV :. :. ... .:. . .:. . mKIAA1 RDAERKSLYTLFLESIQLRLQHGEDSAPHIVNEDQTTKENLIKMQSIAERHLELDDIHDP 390 400 410 420 430 440 120 130 140 150 160 170 mKIAA0 LLIGKSINF----LHQVCHDQTPTTKMIAVTKSAESPRDAADLFTDLENAFQGKIDAAYF :: .::: :.: . . : : .:.:: . .: :.. . .:: :. mKIAA1 LL---AINFARLYLEQSDFHEKFAGGDICVDRSSESVTCQTFELT-LRSCLYPHIDKQYL 450 460 470 480 490 500 180 190 200 210 220 230 mKIAA0 ETSKYLLDVLNKKYSLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTG . :...:.. . :.:..:::: ..:. :: . .. . . .: : .:. .. mKIAA1 HCCGNLMQTLKRDFRLVEYLQAMRNFFLMEGGDTMYDFYTSIFDK-IREKET-WQN--VS 510 520 530 540 550 560 240 250 260 270 280 mKIAA0 ILETAVRATNAQFDSPEILKRLDVRLLEVSPGDTGWDVFSLD-----YHVDGPIATVFTR .:.. .. . .: :: ::.. . .:. : :: :.: :. :.. mKIAA1 FLNVQLQEAVGQ-RYPEDSLRLSISFENVDTTKKKLPVHILDGLTLSYKVPWPVDIVISV 570 580 590 600 610 290 300 310 320 330 mKIAA0 ECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNA----KLLRNMP-------EFSGV--- ::.. : .:: .: . : .: : . :.. :: . ...: .:. mKIAA1 ECQKIYNQVFLLLLQIKWAKYSLDVLLFGELGNAAERSQAKEDIPRDQDTPSQFGPPKES 620 630 640 650 660 670 340 350 360 370 380 390 mKIAA0 ----LHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNRVQQAQDLDHIIAAHEAFLN .:. .: ...::..... :: ..:. . :. ..:..:.:::..: : .:. mKIAA1 LRQQIHRMFLLRVKLMHFVNSLHNYIMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLS 680 690 700 710 720 730 400 410 420 430 440 450 mKIAA0 TITSRCLLDSNSRVLLNQLRAVFDQIIELQNAQDVMYRAALEELQRRLQFEEKKKQREIE :: .:::: mKIAA1 TIHDRCLLREKVSFVKEAIMKVLNLALMFAEGWQAGLGAWQMESIEKMESDFKNCHMFLV 740 750 760 770 780 790 1471 residues in 1 query sequences 1767546 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:18:43 2006 done: Mon Mar 27 10:18:45 2006 Scan time: 1.230 Display time: 0.240 Function used was FASTA [version 3.4t11 Apr 17, 2002]