FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0488.ptfa, 519 aa vs ./tmplib.26680 library 1768498 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.2035+/-0.00539; mu= 12.5477+/- 0.358 mean_var=132.7087+/-31.577, 0's: 0 Z-trim: 17 B-trim: 0 in 0/36 Lambda= 0.1113 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0064 ( 502 res) mpj03270 ( 502) 404 77 5.3e-15 mKIAA0382 ( 1553 res) mbg03948 (1553) 158 38 0.008 mKIAA1232 ( 950 res) mbg05359 ( 950) 154 37 0.0094 >>mKIAA0064 ( 502 res) mpj03270 (502 aa) initn: 267 init1: 172 opt: 404 Z-score: 361.7 bits: 76.5 E(): 5.3e-15 Smith-Waterman score: 431; 26.121% identity (28.530% ungapped) in 379 aa overlap (165-516:46-419) 140 150 160 170 180 190 mKIAA0 DPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAIL ...: .:.::... : : :: .. : mKIAA0 ASRGAANLVVRSSALGNMHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGL 20 30 40 50 60 70 200 210 220 230 240 250 mKIAA0 HQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLS :..:..:.. . : .: : :::. ... ::. ::.:.. : . ..: :. .. :: mKIAA0 HEQLRKEYGANVVPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 80 90 100 110 120 130 260 270 280 290 300 310 mKIAA0 ESDENYNGV--SDVELRVALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALF ..... . : .: :.: : .: : : : .. :..: .:.:::. . . ..::.:: mKIAA0 RAQQETQQVPTEEVSLEVLLSNGQKVLVTVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLF 140 150 160 170 180 190 320 330 340 350 360 mKIAA0 EVINH-----SFVRKLAPNEFPHKLYVQNYTSAVPGTCLTIRKWLFTTEEEVLLNDNDLA : .. :::::: :.:. . : . : : : . ...:. .: .. mKIAA0 LVREKEDGAFSFVRKLQEFELPY-VSVTSLRSQEYKIVLRKSYWDSAYDDDVM--ENRVG 200 210 220 230 240 250 370 380 390 400 410 420 mKIAA0 VTYFFHQAVDDVKKGYIKA-EEKSYQLQKLHEQRKMVMYLNMLRTCEGYNEIIFPHCACD .. .. :.:.:...:.: . .:. ::..:.:. . .: . .: . :. . : :. : mKIAA0 LNLLYAQTVSDIEHGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVAD 260 270 280 290 300 310 430 440 450 460 470 mKIAA0 SRRKG-HVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRW-------------DTDE .: :... . ....:. ::.. .:. .:. : .. mKIAA0 FPEKDCPVVVSAGNSELSLQLRLPGQQLREG--SFRVTRMRCWRVTSSVPLPSGGTSSPS 320 330 340 350 360 370 480 490 500 510 mKIAA0 EG-----MAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEEY .: . . ::: .. . .:: : .: .: :.. . :: .: mKIAA0 RGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRR 380 390 400 410 420 430 mKIAA0 RVGGTLRRSDSQQAVKSPPLLESPDASRESMVKLSSKLSAVSLRGIGSPSTDASASAVHG 440 450 460 470 480 490 >>mKIAA0382 ( 1553 res) mbg03948 (1553 aa) initn: 157 init1: 133 opt: 158 Z-score: 143.1 bits: 37.7 E(): 0.008 Smith-Waterman score: 163; 39.583% identity (48.101% ungapped) in 96 aa overlap (33-128:80-158) 10 20 30 40 50 60 mKIAA0 HPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSIN : : : :...:.:..: :. mKIAA0 SHDFDPTDSSSKKTKSSSEESRSEIYGLVQRCVIIQKDDNGFGLTVSGD----------- 50 60 70 80 90 70 80 90 100 110 120 mKIAA0 GELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILT :. :..: ::: ::::. ::::..:::. : ..: .:: :::.: . . :: mKIAA0 ----NPV-FVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIRSG-SYVALT 100 110 120 130 140 150 130 140 150 160 170 180 mKIAA0 VLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQ : . :: mKIAA0 VQGRPPGSPQIPLADSEVEPSVTGHMSPIMTSPHSPGAAGNMERITSPVLVGEENNVVHN 160 170 180 190 200 210 >>mKIAA1232 ( 950 res) mbg05359 (950 aa) initn: 183 init1: 106 opt: 154 Z-score: 141.8 bits: 36.7 E(): 0.0094 Smith-Waterman score: 176; 40.594% identity (48.810% ungapped) in 101 aa overlap (32-130:517-602) 10 20 30 40 50 60 mKIAA0 IHPSAPHRNGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSI :: . . :. .: :::. : .: :. mKIAA1 VTYPAPPQVPPTRYSPIPRHMLAEEDFTREPRKIILHKGSTGLGFNIVG--GEDGE---- 490 500 510 520 530 540 70 80 90 100 110 mKIAA0 NGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVD-LIRAGEKEL : . :: .: :: :: .: .:.::::: :::::...:::.:.. : :::.. mKIAA1 -GIF------VSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQS-- 550 560 570 580 590 120 130 140 150 160 170 mKIAA0 ILTVLSVPPHEADNLDPSDDSLGQSFYDYTEKQAVPISVPTYKHVEQNGEKFVVYNVYMA . : . :.: mKIAA1 VTIVAQYRPEEYSRFESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYDRTRDS 600 610 620 630 640 650 519 residues in 1 query sequences 1768498 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:21:54 2006 done: Mon Mar 27 10:21:55 2006 Scan time: 0.690 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]